myRT

myRT report for GCA_002541555.1_ASM254155v1

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Seq: NMDP01000030.1 Escherichia coli strain MOD1-EC6062 MOD1-EC6062_30_length_55933_cov_29.9062, whole genome shotgun sequence (55933 bp)
Overview 1 RT 1: 40801-46361 bp Neighborhood of RT #1 [40801, 46366] RVT-Retrons Q P Feature: gene Location: 40801-41136 bp Feature: gene Location: 41399-41560 bp Feature: gene Location: 41593-43533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41917-42541 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 91 7-42541 bp Feature: gene Location: 43575-44600 bp Feature: domain Description: Q Location: 43578-44595 bp Feature: domain Description: Q Location: 43578-44595 bp Feature: gene Location: 44600-46366 bp Feature: domain Description: P Location: 44627-46361 bp Feature: domain Description: P Location: 44627-46361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: NMDP01000077.1 Escherichia coli strain MOD1-EC6062 MOD1-EC6062_77_length_8805_cov_13.3918, whole genome shotgun sequence (8805 bp)
Overview 1 RT 1: 1-4996 bp Neighborhood of RT #1 [1, 4996] autotrans_barl RVT-GII GIIM Feature: gene Location: 1-1137 bp Feature: domain Description: autotrans_barl Location: 61-1135 bp Feature: domain Description: autotrans_barl Location: 61-1135 bp Feature: gene Location: 1269-1574 bp Feature: gene Location: 1617-3005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1947-2565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1947-2 565 bp Feature: domain Description: GIIM Note: maturase Location: 2613-2844 bp Feature: domain Description: GIIM Note: maturase Location: 2 613-2 844 bp Feature: gene Location: 3795-4379 bp Feature: gene Location: 4811-4996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: NMDP01000085.1 Escherichia coli strain MOD1-EC6062 MOD1-EC6062_85_length_5412_cov_15.2675, whole genome shotgun sequence (5412 bp)
Overview 1 RT 1: 2663-5367 bp Neighborhood of RT #1 [2663, 5372] Tra5 RVT-GII GIIM PRK15388 Feature: gene Location: 2663-3097 bp Feature: domain Description: Tra5 Location: 2774-3080 bp Feature: domain Description: Tra5 Location: 2774-3 080 bp Feature: gene Location: 3317-3793 bp Feature: gene Location: 4125-4442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4134-4329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413 4-43 29 bp Feature: gene Location: 4449-4670 bp Feature: domain Description: GIIM Note: maturase Location: 4485-4593 bp Feature: domain Description: GIIM Note: maturase Location: 4485-4593 bp Feature: gene Location: 4848-5372 bp Feature: domain Description: PRK15388 Location: 4866-5367 bp Feature: domain Description: PRK153 88 Location: 4866-53 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PRK15388 (superoxide dismutase )