myRT

myRT report for GCA_002542275.1_ASM254227v1

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Seq: NMEK01000025.1 Escherichia coli strain MOD1-EC6030 MOD1-EC6030_25_length_28371_cov_47.3935, whole genome shotgun sequence (28371 bp)
Overview 1 RT 1: 19197-21450 bp Neighborhood of RT #1 [19197, 21509] InsE RVT-GII trans_reg_C Feature: gene Location: 19197-19529 bp Feature: gene Location: 19708-19920 bp Feature: domain Description: InsE Location: 19720-19897 bp Feature: domain Description: InsE Location: 1 9720-1 9897 bp Feature: gene Location: 20126-20395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20231-20321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20231 -20321 bp Feature: gene Location: 20568-20909 bp Feature: gene Location: 21207-21509 bp Feature: domain Description: trans_reg_C Location: 21255-21450 bp Feature: domain Description: trans_reg_C Location: 21 255-21 450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, trans_reg_C (cd00383)

Seq: NMEK01000033.1 Escherichia coli strain MOD1-EC6030 MOD1-EC6030_33_length_12365_cov_54.6197, whole genome shotgun sequence (12365 bp)
Overview 1 RT 1: 2-2400 bp Neighborhood of RT #1 [2, 2417] CbeA_antitoxin RVT-GII GIIM CbeA_antitoxin Feature: gene Location: 2-130 bp Feature: gene Location: 180-527 bp Feature: domain Description: CbeA_antitoxin Location: 234-480 bp Feature: domain Description: CbeA_antitoxin Location: 2 34-480 bp Feature: gene Location: 564-1805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-142 8 bp Feature: domain Description: GIIM Note: maturase Location: 1509-1731 bp Feature: domain Description: GIIM Note: maturase Location: 1509-1731 bp Feature: gene Location: 1832-2182 bp Feature: gene Location: 2223-2417 bp Feature: domain Description: CbeA_antitoxin Location: 2343-2400 bp Feature: domain Description: CbeA_antitoxin Location: 2 343-2 400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbeA_antitoxin (pfam06154), RVT-GII, GIIM (pfam08388)