myRT

myRT report for GCA_002543065.1_ASM254306v1

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Seq: NMFB01000002.1 Escherichia coli strain MOD1-EC6012 MOD1-EC6012_2_length_465953_cov_35.1127, whole genome shotgun sequence (465953 bp)
Overview 1 RT 1: 274573-279873 bp Neighborhood of RT #1 [274573, 279873] Q RVT-Retrons Feature: gene Location: 274573-275592 bp Feature: domain Description: Q Location: 274576-275587 bp Feature: domain Description: Q Location: 274576-275587 bp Feature: gene Location: 275635-276342 bp Feature: gene Location: 276339-277529 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 276489-277071 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 276489-277071 bp Feature: gene Location: 277845-277988 bp Feature: gene Location: 278035-279873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons

Seq: NMFB01000003.1 Escherichia coli strain MOD1-EC6012 MOD1-EC6012_3_length_330072_cov_40.1561, whole genome shotgun sequence (330072 bp)
Overview 1 RT 1: 194377-197673 bp Neighborhood of RT #1 [194377, 197687] CdiI_3 RVT-GII RVT-GII GIIM ArgR Feature: gene Location: 194377-194763 bp Feature: domain Description: CdiI_3 Location: 194401-194677 bp Feature: domain Description: CdiI_3 Location: 194401-194677 bp Feature: gene Location: 194909-195103 bp Feature: gene Location: 195211-195693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195532-195619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195532 -195619 bp Feature: gene Location: 195732-196502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195735-196149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195735-196149 bp Feature: domain Description: GIIM Note: maturase Location: 196200-196365 bp Feature: domain Description: GIIM Note: maturase Location: 1962 00-196365 bp Feature: gene Location: 196752-196970 bp Feature: gene Location: 197208-197687 bp Feature: domain Description: ArgR Location: 197241-197673 bp Feature: domain Description: ArgR Location: 1972 41-197673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388), ArgR (COG1438)

Seq: NMFB01000008.1 Escherichia coli strain MOD1-EC6012 MOD1-EC6012_8_length_180825_cov_36.3691, whole genome shotgun sequence (180825 bp)
Overview 1 RT 1: 22165-29866 bp Neighborhood of RT #1 [22165, 30003] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22165-23418 bp Feature: domain Description: proA Location: 22192-23383 bp Feature: domain Description: proA Location: 22192-23 3 83 bp Feature: gene Location: 23972-24442 bp Feature: gene Location: 24789-27998 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 25317-25806 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 253 17-25806 bp Feature: domain Description: nitrilase Location: 27312-27909 bp Feature: domain Description: nitrilase Location: 273 12-27909 bp Feature: gene Location: 28293-29096 bp Feature: domain Description: AbiEi_3_N Location: 28326-28587 bp Feature: domain Description: AbiEi_3 _N Location: 283 26-28587 bp Feature: domain Description: AbiEi_3 Location: 28599-29055 bp Feature: domain Description: AbiEi_3 Location: 28599-29055 bp Feature: gene Location: 29083-30003 bp Feature: domain Description: AbiEii Location: 29125-29866 bp Feature: domain Description: AbiEii Location: 29125-29866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)