myRT

myRT report for GCA_002543855.1_ASM254385v1

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Seq: NMFZ01000015.1 Escherichia coli strain MOD1-EC5983 MOD1-EC5983_15_length_107877_cov_22.8609, whole genome shotgun sequence (107877 bp)
Overview 1 RT 1: 88834-92596 bp Neighborhood of RT #1 [88834, 92596] PRK13699 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 88834-89580 bp Feature: domain Description: PRK13699 Location: 88969-89578 bp Feature: domain Description: PRK1 3699 Location: 88969-89578 bp Feature: gene Location: 89908-90042 bp Feature: gene Location: 90067-91767 bp Feature: RT Description: RVT_N Location: 90121-90364 bp Feature: RT Description: RVT_N Location: 901 21 -90364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90409-91045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90409-91 045 bp Feature: domain Description: GIIM Note: maturase Location: 91096-91330 bp Feature: domain Description: GIIM Note: maturase Location: 91 096-91 330 bp Feature: domain Description: HNHc Note: nucleases Location: 91561-91711 bp Feature: domain Description: HNHc Note: nucleases Location: 91 561 -91 71 1 bp Feature: gene Location: 92156-92341 bp Feature: gene Location: 92459-92596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NMFZ01000032.1 Escherichia coli strain MOD1-EC5983 MOD1-EC5983_32_length_23716_cov_21.2559, whole genome shotgun sequence (23716 bp)
Overview 1 RT 1: 20797-23690 bp Neighborhood of RT #1 [20797, 23713] PapG_CBD PapG_C RVT-GII GIIM COG4584 Feature: gene Location: 20797-21708 bp Feature: domain Description: PapG_CBD Location: 20860-21349 bp Feature: domain Description: PapG_CBD Location: 2 0860-2 1349 bp Feature: domain Description: PapG_C Location: 21385-21703 bp Feature: domain Description: PapG_C Location: 2 1385-2 1703 bp Feature: gene Location: 21855-22160 bp Feature: gene Location: 22203-23498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22533-23151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 533-2 3151 bp Feature: domain Description: GIIM Note: maturase Location: 23199-23430 bp Feature: domain Description: GIIM Note: maturase Location: 2 3199-2 3430 bp Feature: gene Location: 23495-23713 bp Feature: domain Description: COG4584 Location: 23498-23690 bp Feature: domain Description: COG4584 Location: 2 3498-2 3690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PapG_CBD (cl28665), PapG_C (pfam03628), RVT-GII, GIIM (pfam08388), COG4584 (Transposase )

Seq: NMFZ01000004.1 Escherichia coli strain MOD1-EC5983 MOD1-EC5983_4_length_350291_cov_30.071, whole genome shotgun sequence (350291 bp)
Overview 1 RT 1: 272288-276899 bp Neighborhood of RT #1 [272288, 276899] HTH_1 PBP2_CrgA_like_5 PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 272288-273172 bp Feature: domain Description: HTH_1 Location: 272312-272486 bp Feature: domain Description: HTH_1 Location: 2723 12-272486 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 272567-273164 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 272567-273 164 bp Feature: gene Location: 273756-273971 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 273759-273945 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 273 759-273 945 bp Feature: gene Location: 274836-275768 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 274938-275529 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27493 8-275529 bp Feature: gene Location: 275755-276723 bp Feature: gene Location: 276756-276899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474), RVT-Retrons

Seq: NMFZ01000005.1 Escherichia coli strain MOD1-EC5983 MOD1-EC5983_5_length_328469_cov_30.9574, whole genome shotgun sequence (328469 bp)
Overview 1 RT 1: 197129-203692 bp Neighborhood of RT #1 [197129, 203700] DUF5405 Phage_GPA RVT-Retrons ABC_ATPase Q Feature: gene Location: 197129-197404 bp Feature: domain Description: DUF5405 Location: 197147-197387 bp Feature: domain Description: DUF54 05 Location: 19714 7-197387 bp Feature: gene Location: 197394-199664 bp Feature: domain Description: Phage_GPA Location: 197793-198780 bp Feature: domain Description: Phage_GPA Location: 197793-198780 bp Feature: gene Location: 199992-200981 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 200109-200670 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 200109-200670 bp Feature: gene Location: 200983-202335 bp Feature: domain Description: ABC_ATPase Location: 201043-201766 bp Feature: domain Description: ABC_ATPase Location: 20104 3-201766 bp Feature: gene Location: 202666-203700 bp Feature: domain Description: Q Location: 202669-203692 bp Feature: domain Description: Q Location: 202669-203692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons, ABC_ATPase (pfam09818), Q (PHA02536)