myRT

myRT report for GCA_002544265.1_ASM254426v1

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Seq: NMGU01000040.1 Escherichia coli strain MOD1-EC5959 MOD1-EC5959_40_length_24022_cov_53.5554, whole genome shotgun sequence (24022 bp)
Overview 1 RT 1: 19233-22404 bp Neighborhood of RT #1 [19233, 22406] PRK10276 RVT-GII DDE_Tnp_IS1 Feature: gene Location: 19233-19916 bp Feature: domain Description: PRK10276 Location: 19536-19899 bp Feature: domain Description: PRK1 0276 Location: 1 9536-1 9899 bp Feature: gene Location: 19970-20572 bp Feature: gene Location: 20547-21557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20553-21165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20553-21 1 65 bp Feature: gene Location: 21680-21892 bp Feature: gene Location: 21903-22406 bp Feature: domain Description: DDE_Tnp_IS1 Location: 22014-22404 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2201 4-22404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: NMGU01000050.1 Escherichia coli strain MOD1-EC5959 MOD1-EC5959_50_length_8589_cov_39.2189, whole genome shotgun sequence (8589 bp)
Overview 1 RT 1: 700-8588 bp Neighborhood of RT #1 [700, 8587] PAAR_2 RhsA RHS_repeat RhsA RhsA RVT-GII GIIM DDE_Tnp_1_assoc Feature: gene Location: 700-4920 bp Feature: domain Description: PAAR_2 Location: 706-787 bp Feature: domain Description: PAAR_2 Location: 706-787 bp Feature: domain Description: RhsA Location: 1285-1732 bp Feature: domain Description: RhsA Location: 12 85-1732 bp Feature: domain Description: RHS_repeat Location: 1795-1885 bp Feature: domain Description: RHS_repeat Location: 1795-1885 bp Feature: domain Description: RhsA Location: 1954-2290 bp Feature: domain Description: RhsA Location: 1954-2 2 90 bp Feature: domain Description: RhsA Location: 2317-4486 bp Feature: domain Description: RhsA Location: 2 317-4486 bp Feature: gene Location: 5934-6308 bp Feature: gene Location: 6657-8156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7110-7767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7110-7767 bp Feature: domain Description: GIIM Note: maturase Location: 7851-8061 bp Feature: domain Description: GIIM Note: maturase Location: 7851-8061 bp Feature: gene Location: 8363-8587 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 8384-8588 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 8384-8588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593)