myRT

myRT report for GCA_002544275.1_ASM254427v1

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Seq: NMGP01000004.1 Escherichia coli strain MOD1-EC5964 MOD1-EC5964_4_length_350498_cov_34.1401, whole genome shotgun sequence (350498 bp)
Overview 1 RT 1: 199656-205576 bp Neighborhood of RT #1 [199656, 205596] groEL RVT_N RVT-GII GIIM HNHc DUF4156 YjeJ Feature: gene Location: 199656-201302 bp Feature: domain Description: groEL Location: 199662-201285 bp Feature: domain Description: groEL Location: 1 99662-201 285 bp Feature: gene Location: 201487-201741 bp Feature: gene Location: 202399-204066 bp Feature: RT Description: RVT_N Location: 202462-202696 bp Feature: RT Description: RVT_N Location: 202462-202696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202750-203395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202750-203395 bp Feature: domain Description: GIIM Note: maturase Location: 203449-203680 bp Feature: domain Description: GIIM Note: maturase Location: 203449-203680 bp Feature: domain Description: HNHc Note: nucleases Location: 203890-204052 bp Feature: domain Description: HNHc Note: nucleases Location: 203890-204052 bp Feature: gene Location: 204324-204677 bp Feature: domain Description: DUF4156 Location: 204393-204669 bp Feature: domain Description: DUF41 56 Location: 204393-204669 bp Feature: gene Location: 204727-205596 bp Feature: domain Description: YjeJ Location: 204730-205576 bp Feature: domain Description: YjeJ Location: 204730-205576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4156 (pfam13698), YjeJ (pfam15922)

Seq: NMGP01000009.1 Escherichia coli strain MOD1-EC5964 MOD1-EC5964_9_length_203805_cov_33.2452, whole genome shotgun sequence (203805 bp)
Overview 1 RT 1: 82364-87392 bp Neighborhood of RT #1 [82364, 87392] P Q RVT-Retrons Feature: gene Location: 82364-84130 bp Feature: domain Description: P Location: 82391-84125 bp Feature: domain Description: P Location: 82 391-8412 5 bp Feature: gene Location: 84130-85155 bp Feature: domain Description: Q Location: 84133-85147 bp Feature: domain Description: Q Location: 84133-85147 bp Feature: gene Location: 85191-86120 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 85290-85875 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 852 90-85875 bp Feature: gene Location: 86122-86892 bp Feature: gene Location: 87240-87392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons