myRT

myRT report for GCA_002544375.1_ASM254437v1

Download annotations/find similar RTs

Seq: NMGV01000026.1 Escherichia coli strain MOD1-EC5958 MOD1-EC5958_26_length_52537_cov_29.8487, whole genome shotgun sequence (52537 bp)
Overview 1 RT 1: 49655-51835 bp Neighborhood of RT #1 [49655, 52488] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 49655-49945 bp Feature: gene Location: 49955-51016 bp Feature: domain Description: HTH_29 Location: 50075-50246 bp Feature: domain Description: HTH_29 Location: 50075-50246 bp Feature: domain Description: HTH_33 Location: 50279-50441 bp Feature: domain Description: HTH_33 Location: 50279-50441 bp Feature: domain Description: DDE_3 Location: 50483-50912 bp Feature: domain Description: DDE_3 Location: 50483-5091 2 bp Feature: gene Location: 51118-52488 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 51379-51835 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 51 379-51 835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: NMGV01000009.1 Escherichia coli strain MOD1-EC5958 MOD1-EC5958_9_length_199000_cov_31.301, whole genome shotgun sequence (199000 bp)
Overview 1 RT 1: 4339-8461 bp Neighborhood of RT #1 [4339, 8502] rve RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 4339-5031 bp Feature: domain Description: rve Location: 4474-4840 bp Feature: domain Description: rve Location: 4474-4840 bp Feature: gene Location: 5176-5343 bp Feature: gene Location: 5369-6601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5570-6224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5570-62 2 4 bp Feature: domain Description: GIIM Note: maturase Location: 6302-6524 bp Feature: domain Description: GIIM Note: maturase Location: 6302 -652 4 bp Feature: gene Location: 6596-7015 bp Feature: gene Location: 7063-8502 bp Feature: domain Description: LZ_Tnp_IS66 Location: 7201-7426 bp Feature: domain Description: LZ_Tnp_IS66 Location: 72 01-742 6 bp Feature: domain Description: zf-IS66 Location: 7447-7579 bp Feature: domain Description: zf-IS66 Location: 7447-7579 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7624-8461 bp Feature: domain Description: DDE_Tnp_IS66 Location: 762 4-8461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)