myRT

myRT report for GCA_002544545.1_ASM254454v1

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Seq: NMHF01000010.1 Escherichia coli strain MOD1-EC5942 MOD1-EC5942_10_length_169594_cov_33.3168, whole genome shotgun sequence (169594 bp)
Overview 1 RT 1: 1-2507 bp Neighborhood of RT #1 [1, 2524] DUF987 CbeA_antitoxin RVT-GII GIIM CbeA_antitoxin Feature: gene Location: 1-216 bp Feature: domain Description: DUF987 Location: 4-190 bp Feature: domain Description: DUF987 Location: 4-1 90 bp Feature: gene Location: 227-634 bp Feature: domain Description: CbeA_antitoxin Location: 341-587 bp Feature: domain Description: CbeA_antitoxin Location: 341 -587 bp Feature: gene Location: 671-1912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1 535 bp Feature: domain Description: GIIM Note: maturase Location: 1616-1838 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 6-1 838 bp Feature: gene Location: 1939-2289 bp Feature: gene Location: 2330-2524 bp Feature: domain Description: CbeA_antitoxin Location: 2450-2507 bp Feature: domain Description: CbeA_antitoxin Location: 2450-2507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF987 (pfam06174), CbeA_antitoxin (pfam06154), RVT-GII, GIIM (pfam08388)

Seq: NMHF01000001.1 Escherichia coli strain MOD1-EC5942 MOD1-EC5942_1_length_494926_cov_33.8413, whole genome shotgun sequence (494926 bp)
Overview 1 RT 1: 38246-41542 bp Neighborhood of RT #1 [38246, 41556] CdiI_3 RVT-GII RVT-GII GIIM ArgR Feature: gene Location: 38246-38632 bp Feature: domain Description: CdiI_3 Location: 38270-38546 bp Feature: domain Description: CdiI_3 Location: 382 70-38546 bp Feature: gene Location: 38778-38972 bp Feature: gene Location: 39080-39562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39401-39488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39401-39488 bp Feature: gene Location: 39601-40371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39604-40018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39604-40018 bp Feature: domain Description: GIIM Note: maturase Location: 40069-40234 bp Feature: domain Description: GIIM Note: maturase Location: 40069-402 34 bp Feature: gene Location: 40621-40839 bp Feature: gene Location: 41077-41556 bp Feature: domain Description: ArgR Location: 41110-41542 bp Feature: domain Description: ArgR Location: 41110-41542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388), ArgR (COG1438)

Seq: NMHF01000020.1 Escherichia coli strain MOD1-EC5942 MOD1-EC5942_20_length_92748_cov_33.3356, whole genome shotgun sequence (92748 bp)
Overview 1 RT 1: 47292-51174 bp Neighborhood of RT #1 [47292, 51179] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 47292-47750 bp Feature: domain Description: dut Location: 47298-47745 bp Feature: domain Description: dut Location: 47298-47745 bp Feature: gene Location: 47857-48453 bp Feature: domain Description: slmA Location: 47863-48439 bp Feature: domain Description: slmA Location: 47863 -4843 9 bp Feature: gene Location: 48499-49458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48634-49183 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4863 4-49183 bp Feature: gene Location: 49756-50412 bp Feature: domain Description: pyrE Location: 49774-50407 bp Feature: domain Description: pyrE Location: 49774-50407 bp Feature: gene Location: 50463-51179 bp Feature: domain Description: rph Location: 50466-51174 bp Feature: domain Description: rph Location: 50466-51174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NMHF01000059.1 Escherichia coli strain MOD1-EC5942 MOD1-EC5942_59_length_2389_cov_87.4952, whole genome shotgun sequence (2389 bp)
Overview 1 RT 1: 261-2386 bp Neighborhood of RT #1 [261, 2386] RVT-GII GIIM Feature: gene Location: 261-1784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534 -1266 bp Feature: domain Description: GIIM Note: maturase Location: 1341-1539 bp Feature: domain Description: GIIM Note: maturase Location: 134 1-1539 bp Feature: gene Location: 2078-2386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)