myRT

myRT report for GCA_002545655.1_ASM254565v1

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Seq: NOAC01000101.1 Escherichia coli strain MOD1-EC5870 MOD1-EC5870_101_length_9184_cov_38.543, whole genome shotgun sequence (9184 bp)
Overview 1 RT 1: 100-9106 bp Neighborhood of RT #1 [100, 9132] VgrG PAAR_2 RhsA RHS_repeat RhsA RhsA RVT-GII Feature: gene Location: 100-2244 bp Feature: domain Description: VgrG Location: 127-1801 bp Feature: domain Description: VgrG Location: 1 27-1 801 bp Feature: gene Location: 2312-6532 bp Feature: domain Description: PAAR_2 Location: 2318-2399 bp Feature: domain Description: PAAR_2 Location: 231 8-2399 bp Feature: domain Description: RhsA Location: 2897-3344 bp Feature: domain Description: RhsA Location: 2897-3344 bp Feature: domain Description: RHS_repeat Location: 3407-3497 bp Feature: domain Description: RHS_repeat Location: 3407-3497 bp Feature: domain Description: RhsA Location: 3572-3902 bp Feature: domain Description: RhsA Location: 3572-3902 bp Feature: domain Description: RhsA Location: 3929-6098 bp Feature: domain Description: RhsA Location: 3929-6098 bp Feature: gene Location: 8251-9132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8722-9106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8722-91 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VgrG (COG3501), PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593), RVT-GII

Seq: NOAC01000132.1 Escherichia coli strain MOD1-EC5870 MOD1-EC5870_132_length_3286_cov_76.9121, whole genome shotgun sequence (3286 bp)
Overview 1 RT 1: 187-3144 bp Neighborhood of RT #1 [187, 3167] RVT-GII GIIM PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 187-1710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460-1192 bp Feature: domain Description: GIIM Note: maturase Location: 1267-1465 bp Feature: domain Description: GIIM Note: maturase Location: 12 67-1465 bp Feature: gene Location: 2302-2514 bp Feature: domain Description: PHA02517 Location: 2305-2449 bp Feature: domain Description: PHA02 517 Location: 2 305-2 449 bp Feature: gene Location: 2736-3167 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2742-3012 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 742 -3012 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3033-3144 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3033-3144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)