myRT

myRT report for GCA_002545775.1_ASM254577v1

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Seq: NOAE01000054.1 Escherichia coli strain MOD1-EC5868 MOD1-EC5868_54_length_8904_cov_55.7203, whole genome shotgun sequence (8904 bp)
Overview 1 RT 1: 1039-8903 bp Neighborhood of RT #1 [1039, 8902] PAAR_2 RhsA RHS_repeat RhsA RhsA RVT-GII GIIM DDE_Tnp_1_assoc Feature: gene Location: 1039-5259 bp Feature: domain Description: PAAR_2 Location: 1045-1126 bp Feature: domain Description: PAAR_2 Location: 1 045-1 1 26 bp Feature: domain Description: RhsA Location: 1624-2071 bp Feature: domain Description: RhsA Location: 1 624-2071 bp Feature: domain Description: RHS_repeat Location: 2134-2224 bp Feature: domain Description: RHS_repeat Location: 21 34-2224 bp Feature: domain Description: RhsA Location: 2293-2629 bp Feature: domain Description: RhsA Location: 2293-2629 bp Feature: domain Description: RhsA Location: 2656-4825 bp Feature: domain Description: RhsA Location: 2656-4825 bp Feature: gene Location: 6273-6647 bp Feature: gene Location: 6996-8495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7449-8106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7449-81 06 bp Feature: domain Description: GIIM Note: maturase Location: 8190-8400 bp Feature: domain Description: GIIM Note: maturase Location: 81 90-8400 bp Feature: gene Location: 8702-8902 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 8723-8903 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 8723-8903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808)

Seq: NOAE01000069.1 Escherichia coli strain MOD1-EC5868 MOD1-EC5868_69_length_2272_cov_118.268, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)