myRT

myRT report for GCA_002545925.1_ASM254592v1

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Seq: NOAP01000110.1 Escherichia coli strain MOD1-EC5856 MOD1-EC5856_110_length_1922_cov_56.0623, whole genome shotgun sequence (1920 bp)
Overview 1 RT 1: 1-1562 bp Neighborhood of RT #1 [1, 1562] RVT_N RVT-GII Feature: gene Location: 1-1089 bp Feature: domain Description: RVT_N Location: 55-298 bp Feature: domain Description: RVT_N Location: 55-298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-979 bp Feature: gene Location: 1126-1254 bp Feature: gene Location: 1305-1562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: NOAP01000015.1 Escherichia coli strain MOD1-EC5856 MOD1-EC5856_15_length_97844_cov_35.2311, whole genome shotgun sequence (97844 bp)
Overview 1 RT 1: 23559-27302 bp Neighborhood of RT #1 [23559, 27313] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 23559-24041 bp Feature: domain Description: SmpB Location: 23589-24036 bp Feature: domain Description: SmpB Location: 2 3589-2 4036 bp Feature: gene Location: 24175-24342 bp Feature: gene Location: 24727-25500 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24862-25315 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 4862 -2 5315 bp Feature: gene Location: 25904-26122 bp Feature: domain Description: PRK09678 Location: 25907-26105 bp Feature: domain Description: PRK09678 Location: 2 5907-2 6105 bp Feature: gene Location: 26213-27313 bp Feature: domain Description: D Location: 26219-27302 bp Feature: domain Description: D Location: 2 62 19-2 7302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: NOAP01000027.1 Escherichia coli strain MOD1-EC5856 MOD1-EC5856_27_length_55840_cov_35.1903, whole genome shotgun sequence (55840 bp)
Overview 1 RT 1: 49333-53215 bp Neighborhood of RT #1 [49333, 53220] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49333-49791 bp Feature: domain Description: dut Location: 49339-49786 bp Feature: domain Description: dut Location: 493 3 9-49786 bp Feature: gene Location: 49898-50494 bp Feature: domain Description: slmA Location: 49904-50480 bp Feature: domain Description: slmA Location: 49904-50480 bp Feature: gene Location: 50540-51499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50675-51224 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50675-51224 bp Feature: gene Location: 51797-52453 bp Feature: domain Description: pyrE Location: 51815-52448 bp Feature: domain Description: pyrE Location: 51815-52448 bp Feature: gene Location: 52504-53220 bp Feature: domain Description: rph Location: 52507-53215 bp Feature: domain Description: rph Location: 52507-53 215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NOAP01000064.1 Escherichia coli strain MOD1-EC5856 MOD1-EC5856_64_length_9021_cov_42.5553, whole genome shotgun sequence (9021 bp)
Overview 1 RT 1: 6104-8663 bp Neighborhood of RT #1 [6104, 8908] Enterotoxin_a PHA02517 RVT-GII GIIM Feature: gene Location: 6104-6880 bp Feature: domain Description: Enterotoxin_a Location: 6113-6878 bp Feature: domain Description: Enterotoxin_a Location: 6113-6878 bp Feature: gene Location: 6999-7445 bp Feature: domain Description: PHA02517 Location: 7002-7443 bp Feature: domain Description: PHA02517 Location: 7002-74 4 3 bp Feature: gene Location: 7562-8908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7658-8390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7658-8390 bp Feature: domain Description: GIIM Note: maturase Location: 8465-8663 bp Feature: domain Description: GIIM Note: maturase Location: 84 65-8663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Enterotoxin_a (pfam01375), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NOAP01000086.1 Escherichia coli strain MOD1-EC5856 MOD1-EC5856_86_length_3464_cov_42.1151, whole genome shotgun sequence (3464 bp)
Overview 1 RT 1: 1275-3384 bp Neighborhood of RT #1 [1275, 3384] InsE RVT_N RVT-GII Feature: gene Location: 1275-1694 bp Feature: domain Description: InsE Location: 1290-1674 bp Feature: domain Description: InsE Location: 1290-1674 bp Feature: gene Location: 1549-1965 bp Feature: gene Location: 2027-2950 bp Feature: domain Description: RVT_N Location: 2075-2318 bp Feature: domain Description: RVT_N Location: 2075 -2318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2363-2933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2363-2933 bp Feature: gene Location: 2977-3384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII