myRT

myRT report for GCA_002546135.1_ASM254613v1

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Seq: NOAZ01000101.1 Escherichia coli strain MOD1-EC5845 MOD1-EC5845_101_length_8786_cov_99.0094, whole genome shotgun sequence (8786 bp)
Overview 1 RT 1: 174-3589 bp Neighborhood of RT #1 [174, 3594] Tra5 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 174-605 bp Feature: domain Description: Tra5 Location: 180-597 bp Feature: domain Description: Tra5 Location: 1 80-597 bp Feature: gene Location: 716-946 bp Feature: gene Location: 998-2239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1271-2003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 271 -2003 bp Feature: domain Description: GIIM Note: maturase Location: 2078-2234 bp Feature: domain Description: GIIM Note: maturase Location: 2078-2234 bp Feature: gene Location: 2831-3298 bp Feature: domain Description: PHA02517 Location: 2897-3236 bp Feature: domain Description: PHA0251 7 Location: 2897-3236 bp Feature: gene Location: 3295-3594 bp Feature: domain Description: InsE Location: 3325-3589 bp Feature: domain Description: InsE Location: 3325-3589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: NOAZ01000143.1 Escherichia coli strain MOD1-EC5845 MOD1-EC5845_143_length_2756_cov_438.702, whole genome shotgun sequence (2756 bp)
Overview 1 RT 1: 2-2039 bp Neighborhood of RT #1 [2, 2134] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-151 bp Feature: gene Location: 233-2134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500-1331 bp Feature: domain Description: Intron_maturas2 Location: 1445-1703 bp Feature: domain Description: Intron_maturas2 Location: 1445-1703 bp Feature: domain Description: HNHc Note: nucleases Location: 1877-2039 bp Feature: domain Description: HNHc Note: nucleases Location: 1877-2 039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NOAZ01000020.1 Escherichia coli strain MOD1-EC5845 MOD1-EC5845_20_length_82477_cov_78.4132, whole genome shotgun sequence (82477 bp)
Overview 1 RT 1: 29145-33025 bp Neighborhood of RT #1 [29145, 33030] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 29145-29861 bp Feature: domain Description: rph Location: 29148-29856 bp Feature: domain Description: rph Location: 29148-29856 bp Feature: gene Location: 29912-30568 bp Feature: domain Description: pyrE Location: 29930-30563 bp Feature: domain Description: pyrE Location: 2993 0-3 0563 bp Feature: gene Location: 30866-31825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31001-31550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 1001-3 1550 bp Feature: gene Location: 31869-32465 bp Feature: domain Description: slmA Location: 31875-32451 bp Feature: domain Description: slmA Location: 3 1875-3 2451 bp Feature: gene Location: 32572-33030 bp Feature: domain Description: dut Location: 32578-33025 bp Feature: domain Description: dut Location: 3 2578-3 3 025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)