myRT

myRT report for GCA_002546345.1_ASM254634v1

Download annotations/find similar RTs

Seq: NOCK01000002.1 Escherichia coli strain MOD1-EC5798 MOD1-EC5798_2_length_278903_cov_50.0376, whole genome shotgun sequence (278903 bp)
Overview 1 RT 1: 241560-247507 bp Neighborhood of RT #1 [241560, 247507] PBP2_CrgA_like_5 RVT-UG8 PRK09678 Feature: gene Location: 241560-241970 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 241632-241944 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 241 632-241 944 bp Feature: gene Location: 242172-242303 bp Feature: gene Location: 242569-244587 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 243145-243595 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2431 45-243595 bp Feature: gene Location: 246474-246746 bp Feature: domain Description: PRK09678 Location: 246483-246639 bp Feature: domain Description: PRK09678 Location: 246483-246639 bp Feature: gene Location: 246746-247507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_CrgA_like_5 (cd08474), RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: NOCK01000038.1 Escherichia coli strain MOD1-EC5798 MOD1-EC5798_38_length_34147_cov_30.7766, whole genome shotgun sequence (34147 bp)
Overview 1 RT 1: 27900-32842 bp Neighborhood of RT #1 [27900, 32853] PRK10276 RVT-GII PAS_3 Tar PinE Feature: gene Location: 27900-28325 bp Feature: domain Description: PRK10276 Location: 27903-28311 bp Feature: domain Description: PRK102 76 Location: 2 7903-2 8311 bp Feature: gene Location: 28517-28729 bp Feature: gene Location: 28804-30213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29131-29821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9131-2 982 1 bp Feature: gene Location: 30406-31983 bp Feature: domain Description: PAS_3 Location: 30499-30748 bp Feature: domain Description: PAS_3 Location: 30499-30748 bp Feature: domain Description: Tar Location: 30817-31966 bp Feature: domain Description: Tar Location: 30817-31966 bp Feature: gene Location: 32293-32853 bp Feature: domain Description: PinE Location: 32311-32842 bp Feature: domain Description: PinE Location: 32 311-32 842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, PAS_3 (pfam08447), Tar (COG0840), PinE (COG1961)