myRT

myRT report for GCA_002547455.1_ASM254745v1

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Seq: NNZL01000015.1 Escherichia coli strain MOD1-EC5890 MOD1-EC5890_15_length_121110_cov_96.4162, whole genome shotgun sequence (121110 bp)
Overview 1 RT 1: 61841-66160 bp Neighborhood of RT #1 [61841, 66177] galF DDE_Tnp_1_assoc RVT-GII RVT-GII RVT-GII YhhI YhhI YhhI Feature: gene Location: 61841-62734 bp Feature: domain Description: galF Location: 61844-62732 bp Feature: domain Description: galF Location: 61 844-62732 bp Feature: gene Location: 63257-63484 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 63272-63437 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 63272-63437 bp Feature: gene Location: 64215-64436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64380-64425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64380-64425 bp Feature: gene Location: 64442-64582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64445-64577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64445-64577 bp Feature: gene Location: 64837-65022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64846-64999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64846-64999 bp Feature: gene Location: 65708-65986 bp Feature: domain Description: YhhI Location: 65720-65843 bp Feature: domain Description: YhhI Location: 65720-65843 bp Feature: domain Description: YhhI Location: 65843-65927 bp Feature: domain Description: YhhI Location: 65843-65927 bp Feature: gene Location: 65989-66177 bp Feature: domain Description: YhhI Location: 65998-66160 bp Feature: domain Description: YhhI Location: 65998-661 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT galF (TIGR01105), DDE_Tnp_1_assoc (pfam13808), RVT-GII, YhhI (COG5433)

Seq: NNZL01000017.1 Escherichia coli strain MOD1-EC5890 MOD1-EC5890_17_length_102050_cov_108.172, whole genome shotgun sequence (102050 bp)
Overview 1 RT 1: 108-5777 bp Neighborhood of RT #1 [108, 5803] SR_ResInv DUF262 DUF1524 RVT-Retrons PBP2_CrgA_like_5 Feature: gene Location: 108-335 bp Feature: domain Description: SR_ResInv Location: 153-270 bp Feature: domain Description: SR_ResInv Location: 153-2 70 bp Feature: gene Location: 369-2258 bp Feature: domain Description: DUF262 Location: 393-1137 bp Feature: domain Description: DUF2 62 Location: 393-1137 bp Feature: domain Description: DUF1524 Location: 1722-2226 bp Feature: domain Description: DUF152 4 Location: 172 2 -2 2 2 6 bp Feature: gene Location: 3056-4891 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3191-3887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3191-3887 bp Feature: gene Location: 5003-5131 bp Feature: gene Location: 5393-5803 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 5465-5777 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 5465-5777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_ResInv (cd03768), DUF262 (pfam03235), DUF1524 (pfam07510), RVT-Retrons, PBP2_CrgA_like_5 (cd08474)

Seq: NNZL01000005.1 Escherichia coli strain MOD1-EC5890 MOD1-EC5890_5_length_263896_cov_97.9271, whole genome shotgun sequence (263896 bp)
Overview 1 RT 1: 218361-223926 bp Neighborhood of RT #1 [218361, 223926] P Q RVT-Retrons Feature: gene Location: 218361-220127 bp Feature: domain Description: P Location: 218388-220122 bp Feature: domain Description: P Location: 2183 88-220122 bp Feature: gene Location: 220127-221152 bp Feature: domain Description: Q Location: 220130-221147 bp Feature: domain Description: Q Location: 22013 0-221147 bp Feature: gene Location: 221194-223134 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 221518-222142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 221518-222142 bp Feature: gene Location: 223167-223328 bp Feature: gene Location: 223591-223926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons