myRT

myRT report for GCA_002547645.1_ASM254764v1

Download annotations/find similar RTs

Seq: NNZV01000012.1 Escherichia coli strain MOD1-EC5877 MOD1-EC5877_12_length_176604_cov_46.7644, whole genome shotgun sequence (176604 bp)
Overview 1 RT 1: 174012-176575 bp Neighborhood of RT #1 [174012, 176601] CbeA_antitoxin RVT-GII GIIM CbeA_antitoxin DUF987 Feature: gene Location: 174012-174206 bp Feature: domain Description: CbeA_antitoxin Location: 174132-174189 bp Feature: domain Description: CbeA_antitoxin Location: 1 741 32-1 741 89 bp Feature: gene Location: 174247-174597 bp Feature: gene Location: 174624-175865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174831-175488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 74831 -1 75488 bp Feature: domain Description: GIIM Note: maturase Location: 175569-175791 bp Feature: domain Description: GIIM Note: maturase Location: 1 75569-1 75791 bp Feature: gene Location: 175902-176306 bp Feature: domain Description: CbeA_antitoxin Location: 176013-176259 bp Feature: domain Description: CbeA_antitoxin Location: 1 7601 3-1 76259 bp Feature: gene Location: 176320-176601 bp Feature: domain Description: DUF987 Location: 176383-176575 bp Feature: domain Description: DUF987 Location: 1 76383-1 76575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbeA_antitoxin (pfam06154), RVT-GII, GIIM (pfam08388), DUF987 (pfam06174)

Seq: NNZV01000043.1 Escherichia coli strain MOD1-EC5877 MOD1-EC5877_43_length_8972_cov_55.4531, whole genome shotgun sequence (8972 bp)
Overview 1 RT 1: 1-2045 bp Neighborhood of RT #1 [1, 2104] InsE RVT-GII trans_reg_C Feature: gene Location: 1-171 bp Feature: gene Location: 303-515 bp Feature: domain Description: InsE Location: 315-492 bp Feature: domain Description: InsE Location: 315-492 bp Feature: gene Location: 697-990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826-916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 6-916 bp Feature: gene Location: 1163-1504 bp Feature: gene Location: 1802-2104 bp Feature: domain Description: trans_reg_C Location: 1850-2045 bp Feature: domain Description: trans_reg_C Location: 1850-2 045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), InsE (COG2963), RVT-GII