myRT

myRT report for GCA_002548335.1_ASM254833v1

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Seq: NOAO01000039.1 Escherichia coli strain MOD1-EC5857 MOD1-EC5857_39_length_39617_cov_36.9091, whole genome shotgun sequence (39617 bp)
Overview 1 RT 1: 5758-8840 bp Neighborhood of RT #1 [5758, 8840] RVT-GII RVT-GII GIIM Feature: gene Location: 5758-5931 bp Feature: gene Location: 5938-6243 bp Feature: gene Location: 6296-6739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6509-6737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6509-6737 bp Feature: gene Location: 6744-7562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6750-7122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6750-71 22 bp Feature: domain Description: GIIM Note: maturase Location: 7170-7392 bp Feature: domain Description: GIIM Note: maturase Location: 71 70-7392 bp Feature: gene Location: 7685-7855 bp Feature: gene Location: 8643-8840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NOAO01000041.1 Escherichia coli strain MOD1-EC5857 MOD1-EC5857_41_length_35448_cov_37.9395, whole genome shotgun sequence (35448 bp)
Overview 1 RT 1: 21178-28879 bp Neighborhood of RT #1 [21178, 29016] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 21178-22431 bp Feature: domain Description: proA Location: 21205-22396 bp Feature: domain Description: proA Location: 2 12 05-2 2 396 bp Feature: gene Location: 22985-23455 bp Feature: gene Location: 23802-27011 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24330-24819 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 4330-2 4819 bp Feature: domain Description: nitrilase Location: 26325-26922 bp Feature: domain Description: nitrilase Location: 2 632 5-2 692 2 bp Feature: gene Location: 27306-28109 bp Feature: domain Description: AbiEi_3_N Location: 27339-27600 bp Feature: domain Description: AbiEi_3_N Location: 2 7339-2 7600 bp Feature: domain Description: AbiEi_3 Location: 27612-28068 bp Feature: domain Description: AbiEi_3 Location: 2 7612 -2 8068 bp Feature: gene Location: 28096-29016 bp Feature: domain Description: AbiEii Location: 28138-28879 bp Feature: domain Description: AbiEii Location: 2 8138-2 8879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: NOAO01000058.1 Escherichia coli strain MOD1-EC5857 MOD1-EC5857_58_length_16107_cov_41.4928, whole genome shotgun sequence (16107 bp)
Overview 1 RT 1: 9923-13905 bp Neighborhood of RT #1 [9923, 13931] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 9923-10954 bp Feature: domain Description: Asparaginase_2 Location: 10013-10946 bp Feature: domain Description: Asparaginase_2 Location: 10013 -10946 bp Feature: gene Location: 11281-11430 bp Feature: gene Location: 11478-11924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11784-11886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11784-11886 bp Feature: gene Location: 12146-12517 bp Feature: gene Location: 12570-13931 bp Feature: domain Description: DcuC Location: 12573-13905 bp Feature: domain Description: DcuC Location: 12573 -13 905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)