myRT

myRT report for GCA_002548425.1_ASM254842v1

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Seq: NOAR01000010.1 Escherichia coli strain MOD1-EC5854 MOD1-EC5854_10_length_155333_cov_39.4243, whole genome shotgun sequence (155333 bp)
Overview 1 RT 1: 36817-40699 bp Neighborhood of RT #1 [36817, 40704] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 36817-37533 bp Feature: domain Description: rph Location: 36820-37528 bp Feature: domain Description: rph Location: 36820-37528 bp Feature: gene Location: 37584-38240 bp Feature: domain Description: pyrE Location: 37602-38235 bp Feature: domain Description: pyrE Location: 37602-38235 bp Feature: gene Location: 38538-39497 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38673-39222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38673-39222 bp Feature: gene Location: 39543-40139 bp Feature: domain Description: slmA Location: 39549-40125 bp Feature: domain Description: slmA Location: 39549-401 25 bp Feature: gene Location: 40246-40704 bp Feature: domain Description: dut Location: 40252-40699 bp Feature: domain Description: dut Location: 40252-40699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NOAR01000015.1 Escherichia coli strain MOD1-EC5854 MOD1-EC5854_15_length_97301_cov_40.9276, whole genome shotgun sequence (97301 bp)
Overview 1 RT 1: 13209-19452 bp Neighborhood of RT #1 [13209, 19589] RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 13209-13475 bp Feature: gene Location: 13558-14028 bp Feature: gene Location: 14375-17584 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14903-15392 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14903-15392 bp Feature: domain Description: nitrilase Location: 16898-17495 bp Feature: domain Description: nitrilase Location: 16898-17495 bp Feature: gene Location: 17900-18682 bp Feature: domain Description: AbiEi_3_N Location: 17906-18173 bp Feature: domain Description: AbiEi_3_N Location: 17906-18173 bp Feature: domain Description: AbiEi_3 Location: 18188-18641 bp Feature: domain Description: AbiEi_3 Location: 18188-18641 bp Feature: gene Location: 18669-19589 bp Feature: domain Description: AbiEii Location: 18711-19452 bp Feature: domain Description: AbiEii Location: 18711-19452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)