myRT

myRT report for GCA_002548535.1_ASM254853v1

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Seq: NOAT01000036.1 Escherichia coli strain MOD1-EC5851 MOD1-EC5851_36_length_15802_cov_29.1758, whole genome shotgun sequence (15802 bp)
Overview 1 RT 1: 6629-8882 bp Neighborhood of RT #1 [6629, 8941] InsE RVT-GII trans_reg_C Feature: gene Location: 6629-6961 bp Feature: gene Location: 7140-7352 bp Feature: domain Description: InsE Location: 7152-7329 bp Feature: domain Description: InsE Location: 71 52-7329 bp Feature: gene Location: 7534-7827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7663-7753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7663-7753 bp Feature: gene Location: 8000-8341 bp Feature: gene Location: 8639-8941 bp Feature: domain Description: trans_reg_C Location: 8687-8882 bp Feature: domain Description: trans_reg_C Location: 8687-8882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, trans_reg_C (cd00383)

Seq: NOAT01000008.1 Escherichia coli strain MOD1-EC5851 MOD1-EC5851_8_length_223890_cov_25.4694, whole genome shotgun sequence (223890 bp)
Overview 1 RT 1: 165-2769 bp Neighborhood of RT #1 [165, 2786] DUF987 CbeA_antitoxin RVT-GII GIIM CbeA_antitoxin Feature: gene Location: 165-386 bp Feature: domain Description: DUF987 Location: 168-360 bp Feature: domain Description: DUF987 Location: 168-360 bp Feature: gene Location: 549-896 bp Feature: domain Description: CbeA_antitoxin Location: 603-849 bp Feature: domain Description: CbeA_antitoxin Location: 603-849 bp Feature: gene Location: 933-2174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1797 bp Feature: domain Description: GIIM Note: maturase Location: 1878-2100 bp Feature: domain Description: GIIM Note: maturase Location: 1878-2 100 bp Feature: gene Location: 2201-2551 bp Feature: gene Location: 2592-2786 bp Feature: domain Description: CbeA_antitoxin Location: 2712-2769 bp Feature: domain Description: CbeA_antitoxin Location: 2 712 -2 769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF987 (pfam06174), CbeA_antitoxin (pfam06154), RVT-GII, GIIM (pfam08388)