myRT

myRT report for GCA_002548545.1_ASM254854v1

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Seq: NOBB01000012.1 Escherichia coli strain MOD1-EC5843 MOD1-EC5843_12_length_124905_cov_43.3624, whole genome shotgun sequence (124905 bp)
Overview 1 RT 1: 107576-111395 bp Neighborhood of RT #1 [107576, 111403] HTH_XRE RVT-Retrons Q Feature: gene Location: 107576-107869 bp Feature: gene Location: 107906-108208 bp Feature: domain Description: HTH_XRE Location: 107918-108080 bp Feature: domain Description: HTH_XRE Location: 1 0791 8-1 08080 bp Feature: gene Location: 108192-109142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108375-108909 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 08375-1 08909 bp Feature: gene Location: 109308-110108 bp Feature: gene Location: 110369-111403 bp Feature: domain Description: Q Location: 110372-111395 bp Feature: domain Description: Q Location: 1 1 0372-1 1 1 395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, Q (PHA02536)

Seq: NOBB01000060.1 Escherichia coli strain MOD1-EC5843 MOD1-EC5843_60_length_18272_cov_53.9035, whole genome shotgun sequence (18272 bp)
Overview 1 RT 1: 2322-6322 bp Neighborhood of RT #1 [2322, 6330] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2322-3683 bp Feature: domain Description: DcuC Location: 2325-3657 bp Feature: domain Description: DcuC Location: 2 32 5-3657 bp Feature: gene Location: 3736-4107 bp Feature: gene Location: 4329-4775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: gene Location: 4823-4972 bp Feature: gene Location: 5299-6330 bp Feature: domain Description: Asparaginase_2 Location: 5389-6322 bp Feature: domain Description: Asparaginase_2 Location: 5389-632 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)