myRT

myRT report for GCA_002548675.1_ASM254867v1

Download annotations/find similar RTs

Seq: NOBF01000010.1 Escherichia coli strain MOD1-EC5839 MOD1-EC5839_10_length_203689_cov_94.1119, whole genome shotgun sequence (203689 bp)
Overview 1 RT 1: 98307-104216 bp Neighborhood of RT #1 [98307, 104216] HTH_36 RVT-AbiP2 DUF4062 Feature: gene Location: 98307-98762 bp Feature: gene Location: 99643-100152 bp Feature: domain Description: HTH_36 Location: 99829-99985 bp Feature: domain Description: HTH_36 Location: 99829-99985 bp Feature: gene Location: 100360-101745 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 100792-101248 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 00792-1 01 248 bp Feature: gene Location: 102260-103597 bp Feature: domain Description: DUF4062 Location: 102293-102536 bp Feature: domain Description: DUF4062 Location: 1 02293-1 02536 bp Feature: gene Location: 103635-104216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), RVT-AbiP2, DUF4062 (pfam13271)

Seq: NOBF01000018.1 Escherichia coli strain MOD1-EC5839 MOD1-EC5839_18_length_113710_cov_85.5412, whole genome shotgun sequence (113710 bp)
Overview 1 RT 1: 70887-75864 bp Neighborhood of RT #1 [70887, 75864] RVT-UG16 PRK13889 Feature: gene Location: 70887-71141 bp Feature: gene Location: 71086-71607 bp Feature: gene Location: 71736-73220 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 72099-72507 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 72 099-72 507 bp Feature: gene Location: 73358-74851 bp Feature: domain Description: PRK13889 Location: 73361-73961 bp Feature: domain Description: PRK13889 Location: 73361-73961 bp Feature: gene Location: 75499-75864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG16, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: NOBF01000053.1 Escherichia coli strain MOD1-EC5839 MOD1-EC5839_53_length_4112_cov_897.361, whole genome shotgun sequence (4112 bp)
Overview 1 RT 1: 1816-4110 bp Neighborhood of RT #1 [1816, 4110] RVT-Retrons CspC Feature: gene Location: 1816-1971 bp Feature: gene Location: 2061-2243 bp Feature: gene Location: 2265-3404 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2409-2964 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2409-2964 bp Feature: gene Location: 3409-3612 bp Feature: domain Description: CspC Location: 3412-3607 bp Feature: domain Description: CspC Location: 3 412-3 607 bp Feature: gene Location: 3811-4110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278)