myRT

myRT report for GCA_002548935.1_ASM254893v1

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Seq: NOBM01000015.1 Escherichia coli strain MOD1-EC5828 MOD1-EC5828_15_length_99320_cov_68.1402, whole genome shotgun sequence (99320 bp)
Overview 1 RT 1: 70383-74743 bp Neighborhood of RT #1 [70383, 74745] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 70383-71483 bp Feature: domain Description: D Location: 70389-71472 bp Feature: domain Description: D Location: 70389-71 472 bp Feature: gene Location: 71574-71792 bp Feature: domain Description: PRK09678 Location: 71577-71775 bp Feature: domain Description: PRK09678 Location: 71 577-71 775 bp Feature: gene Location: 72196-72969 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 72331-72784 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 72331 -72784 bp Feature: gene Location: 73655-74137 bp Feature: domain Description: SmpB Location: 73685-74132 bp Feature: domain Description: SmpB Location: 73685-741 32 bp Feature: gene Location: 74269-74745 bp Feature: domain Description: PRK10724 Location: 74275-74743 bp Feature: domain Description: PRK1 0724 Location: 74275-74743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: NOBM01000016.1 Escherichia coli strain MOD1-EC5828 MOD1-EC5828_16_length_93813_cov_64.5028, whole genome shotgun sequence (93813 bp)
Overview 1 RT 1: 40932-44814 bp Neighborhood of RT #1 [40932, 44819] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 40932-41648 bp Feature: domain Description: rph Location: 40935-41643 bp Feature: domain Description: rph Location: 40935-41643 bp Feature: gene Location: 41699-42355 bp Feature: domain Description: pyrE Location: 41717-42350 bp Feature: domain Description: pyrE Location: 41717-42 350 bp Feature: gene Location: 42653-43612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42788-43337 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 788-43337 bp Feature: gene Location: 43658-44254 bp Feature: domain Description: slmA Location: 43664-44240 bp Feature: domain Description: slmA Location: 43664-442 40 bp Feature: gene Location: 44361-44819 bp Feature: domain Description: dut Location: 44367-44814 bp Feature: domain Description: dut Location: 44367-44814 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NOBM01000004.1 Escherichia coli strain MOD1-EC5828 MOD1-EC5828_4_length_205954_cov_57.5371, whole genome shotgun sequence (205954 bp)
Overview 1 RT 1: 201672-205951 bp Neighborhood of RT #1 [201672, 205953] GT_2_WfgS_like RVT-GII RVT-GII GIIM DDE_Tnp_1_assoc Feature: gene Location: 201672-202415 bp Feature: domain Description: GT_2_WfgS_like Location: 201678-202260 bp Feature: domain Description: GT_2_WfgS_like Location: 201678-202260 bp Feature: gene Location: 203170-203625 bp Feature: gene Location: 203985-204872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204438-204804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20443 8-204804 bp Feature: gene Location: 204854-205483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204860-205094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204860-205094 bp Feature: domain Description: GIIM Note: maturase Location: 205184-205391 bp Feature: domain Description: GIIM Note: maturase Location: 205184-2053 91 bp Feature: gene Location: 205690-205953 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 205711-205951 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 205711-205951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT_2_WfgS_like (cd06433), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808)