myRT

myRT report for GCA_002549575.1_ASM254957v1

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Seq: NOCQ01000028.1 Escherichia coli strain MOD1-EC5791 MOD1-EC5791_28_length_57133_cov_46.5419, whole genome shotgun sequence (57133 bp)
Overview 1 RT 1: 49292-53174 bp Neighborhood of RT #1 [49292, 53179] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49292-49750 bp Feature: domain Description: dut Location: 49298-49745 bp Feature: domain Description: dut Location: 49298-49745 bp Feature: gene Location: 49857-50453 bp Feature: domain Description: slmA Location: 49863-50439 bp Feature: domain Description: slmA Location: 49863-50439 bp Feature: gene Location: 50499-51458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50634-51183 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50634-51 1 83 bp Feature: gene Location: 51756-52412 bp Feature: domain Description: pyrE Location: 51774-52407 bp Feature: domain Description: pyrE Location: 51 774-52407 bp Feature: gene Location: 52463-53179 bp Feature: domain Description: rph Location: 52466-53174 bp Feature: domain Description: rph Location: 52466-531 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NOCQ01000038.1 Escherichia coli strain MOD1-EC5791 MOD1-EC5791_38_length_42998_cov_45.9339, whole genome shotgun sequence (42998 bp)
Overview 1 RT 1: 30680-36773 bp Neighborhood of RT #1 [30680, 36773] Psu PRK09678 RVT-UG8 RVT-UG3 PRK09692 Feature: gene Location: 30680-31234 bp Feature: domain Description: Psu Location: 30704-31214 bp Feature: domain Description: Psu Location: 30704-312 14 bp Feature: gene Location: 31236-31508 bp Feature: domain Description: PRK09678 Location: 31245-31413 bp Feature: domain Description: PRK09678 Location: 312 45-31413 bp Feature: gene Location: 31957-33960 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 32452-32899 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 32 452 -32 899 bp Feature: gene Location: 33964-35160 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 34249-34711 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 342 49-34711 bp Feature: gene Location: 35162-36340 bp Feature: domain Description: PRK09692 Location: 35168-36326 bp Feature: domain Description: PRK09692 Location: 35168-3632 6 bp Feature: gene Location: 36615-36773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG8, RVT-UG3, PRK09692 (Integrase; provisional)

Seq: NOCQ01000084.1 Escherichia coli strain MOD1-EC5791 MOD1-EC5791_84_length_2271_cov_108.551, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 92-2268 bp Neighborhood of RT #1 [92, 2268] RVT-GII GIIM Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 65-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1172-13 70 bp Feature: gene Location: 1909-2268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NOCQ01000086.1 Escherichia coli strain MOD1-EC5791 MOD1-EC5791_86_length_2159_cov_41.8785, whole genome shotgun sequence (2159 bp)
Overview 1 RT 1: 1-1983 bp Neighborhood of RT #1 [1, 2021] PRK15434 RVT-GII IS285 Feature: gene Location: 1-219 bp Feature: domain Description: PRK15434 Location: 4-199 bp Feature: domain Description: PRK154 34 Location: 4 -199 bp Feature: gene Location: 639-860 bp Feature: gene Location: 921-1214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092-1197 bp Feature: gene Location: 1263-2021 bp Feature: domain Description: IS285 Location: 1293-1983 bp Feature: domain Description: IS285 Location: 1293-1983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15434 (GDP-mannose mannosyl hydrolase), RVT-GII, IS285 (COG3328)