myRT

myRT report for GCA_002549635.1_ASM254963v1

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Seq: NOBW01000023.1 Escherichia coli strain MOD1-EC5818 MOD1-EC5818_23_length_70339_cov_88.6539, whole genome shotgun sequence (70339 bp)
Overview 1 RT 1: 42749-46392 bp Neighborhood of RT #1 [42749, 46514] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 42749-42955 bp Feature: gene Location: 42991-43356 bp Feature: gene Location: 43927-45594 bp Feature: RT Description: RVT_N Location: 43975-44212 bp Feature: RT Description: RVT_N Location: 43975-4421 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44263-44905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44263-44905 bp Feature: domain Description: GIIM Note: maturase Location: 44956-45190 bp Feature: domain Description: GIIM Note: maturase Location: 44956-451 90 bp Feature: domain Description: HNHc Note: nucleases Location: 45400-45559 bp Feature: domain Description: HNHc Note: nucleases Location: 45400-45559 bp Feature: gene Location: 45708-46040 bp Feature: gene Location: 46092-46514 bp Feature: domain Description: DUF1380 Location: 46095-46392 bp Feature: domain Description: DUF1 380 Location: 46095-46392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NOBW01000036.1 Escherichia coli strain MOD1-EC5818 MOD1-EC5818_36_length_46759_cov_51.7003, whole genome shotgun sequence (46759 bp)
Overview 1 RT 1: 21757-25639 bp Neighborhood of RT #1 [21757, 25644] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21757-22473 bp Feature: domain Description: rph Location: 21760-22468 bp Feature: domain Description: rph Location: 2 1760-2 2 468 bp Feature: gene Location: 22524-23180 bp Feature: domain Description: pyrE Location: 22542-23175 bp Feature: domain Description: pyrE Location: 2 2 542 -2 3175 bp Feature: gene Location: 23478-24437 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23613-24162 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3613-2 4162 bp Feature: gene Location: 24483-25079 bp Feature: domain Description: slmA Location: 24489-25065 bp Feature: domain Description: slmA Location: 2 4489-2 5065 bp Feature: gene Location: 25186-25644 bp Feature: domain Description: dut Location: 25192-25639 bp Feature: domain Description: dut Location: 2 5192 -2 5639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NOBW01000088.1 Escherichia coli strain MOD1-EC5818 MOD1-EC5818_88_length_5274_cov_49.9667, whole genome shotgun sequence (5274 bp)
Overview 1 RT 1: 2322-4972 bp Neighborhood of RT #1 [2322, 4972] DcuC RVT-GII Feature: gene Location: 2322-3683 bp Feature: domain Description: DcuC Location: 2325-3657 bp Feature: domain Description: DcuC Location: 23 25-3 657 bp Feature: gene Location: 3736-4107 bp Feature: gene Location: 4329-4775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463 5-473 7 bp Feature: gene Location: 4823-4972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII