myRT

myRT report for GCA_002549855.1_ASM254985v1

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Seq: NMTT01000002.1 Faecalibacterium prausnitzii strain CNCM I 4543 NODE_1_length_665406_cov_38.6993_ID_251, whole genome shotgun sequence (665406 bp)
Overview 1 RT 1: 296842-300577 bp 2 RT 2: 306728-310640 bp 3 RT 3: 539125-544817 bp Neighborhood of RT #1 [296842, 300577] RVT-Retrons RVT-Retrons ThiF Neighborhood of RT #2 [306728, 310663] bZIP_2 RVT-DGRs Avd_like Neighborhood of RT #3 [539125, 544817] Eco57I HTH_XRE RVT-UG2 CxxCG_CxxCG_HTH GepA Feature: gene Location: 296842-296982 bp Feature: gene Location: 296999-297346 bp Feature: gene Location: 297379-298611 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 297640-297817 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 297640-29781 7 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 297874-298321 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 297874-298321 bp Feature: gene Location: 298917-299597 bp Feature: domain Description: ThiF Location: 298962-299541 bp Feature: domain Description: ThiF Location: 298962-299541 bp Feature: gene Location: 299612-300577 bp Feature: gene Location: 306728-306931 bp Feature: domain Description: bZIP_2 Location: 306785-306872 bp Feature: domain Description: bZIP_2 Location: 306785-306872 bp Feature: gene Location: 306924-308780 bp Feature: gene Location: 308692-309945 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 308992-309637 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 308992-309637 bp Feature: gene Location: 310134-310271 bp Feature: gene Location: 310304-310663 bp Feature: domain Description: Avd_like Location: 310355-310640 bp Feature: domain Description: Avd_like Location: 31 0355-31 0640 bp Feature: gene Location: 539125-541161 bp Feature: domain Description: Eco57I Location: 540109-540400 bp Feature: domain Description: Eco57I Location: 5401 09-540400 bp Feature: gene Location: 541335-541637 bp Feature: domain Description: HTH_XRE Location: 541344-541515 bp Feature: domain Description: HTH_XRE Location: 541 344-541 51 5 bp Feature: gene Location: 541696-543012 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 541894-542725 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 541 894-542725 bp Feature: gene Location: 543408-544403 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 543432-543807 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 543432-543807 bp Feature: domain Description: GepA Location: 543945-544332 bp Feature: domain Description: GepA Location: 543945-544332 bp Feature: gene Location: 544431-544817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ThiF (pfam00899), bZIP_2 (pfam07716), RVT-DGRs, Avd_like (cd16376), Eco57I (pfam07669), HTH_XRE (smart00530), RVT-UG2, CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600)

Seq: NMTT01000003.1 Faecalibacterium prausnitzii strain CNCM I 4543 NODE_2_length_559563_cov_46.1116_ID_317, whole genome shotgun sequence (559563 bp)
Overview 1 RT 1: 427472-430164 bp Neighborhood of RT #1 [427472, 430164] COG4877 RVT-DGRs Feature: gene Location: 427472-427657 bp Feature: domain Description: COG4877 Location: 427481-427631 bp Feature: domain Description: COG4877 Location: 42 7481-42 7631 bp Feature: gene Location: 427664-428122 bp Feature: gene Location: 428507-429688 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 428786-429392 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42 8786-42 9392 bp Feature: gene Location: 429640-429975 bp Feature: gene Location: 429991-430164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4877 (Uncharacterized protein ), RVT-DGRs