myRT

myRT report for GCA_002549895.2_ASM254989v2

Download annotations/find similar RTs

Seq: NMTS02000001.1 Faecalibacterium prausnitzii strain CNCM I 4542 Scaffold_1, whole genome shotgun sequence (900579 bp)
Overview 1 RT 1: 112271-116914 bp 2 RT 2: 776757-780302 bp Neighborhood of RT #1 [112271, 117504] TraG-D_C Maff2 RVT-GII HNHc RpoE zf-HC2 Neighborhood of RT #2 [776757, 780400] RVT-DGRs Avd_like Feature: gene Location: 112271-113005 bp Feature: domain Description: TraG-D_C Location: 112445-112799 bp Feature: domain Description: TraG-D_C Location: 1 1 2445-1 1 2799 bp Feature: gene Location: 113146-113277 bp Feature: domain Description: Maff2 Location: 113149-113272 bp Feature: domain Description: Maff2 Location: 1 1 31 49-1 1 3272 bp Feature: gene Location: 113992-115869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114319-115057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 431 9-1 1 5057 bp Feature: domain Description: HNHc Note: nucleases Location: 115594-115756 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 5594-1 1 5756 bp Feature: gene Location: 116295-116807 bp Feature: domain Description: RpoE Location: 116319-116799 bp Feature: domain Description: RpoE Location: 1 1 631 9-1 1 6799 bp Feature: gene Location: 116800-117504 bp Feature: domain Description: zf-HC2 Location: 116815-116914 bp Feature: domain Description: zf-HC2 Location: 1 1 681 5-1 1 691 4 bp Feature: gene Location: 776757-776960 bp Feature: gene Location: 776975-778234 bp Feature: gene Location: 778254-779483 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 778488-779103 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 778488-7791 03 bp Feature: gene Location: 779630-779782 bp Feature: gene Location: 779825-780400 bp Feature: domain Description: Avd_like Location: 780032-780302 bp Feature: domain Description: Avd_like Location: 780032-780302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), Maff2 (pfam12750), RVT-GII, HNHc (smart00507), RpoE (COG3343), zf-HC2 (pfam13490), RVT-DGRs, Avd_like (cd16376)

Seq: NMTS02000013.1 Faecalibacterium prausnitzii strain CNCM I 4542 Scaffold_13, whole genome shotgun sequence (37019 bp)
Overview 1 RT 1: 32543-36808 bp Neighborhood of RT #1 [32543, 36843] UPRTase RVT-Retrons SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Feature: gene Location: 32543-33424 bp Feature: domain Description: UPRTase Location: 33059-33194 bp Feature: domain Description: UPRTase Location: 33059-33194 bp Feature: gene Location: 33436-33741 bp Feature: gene Location: 34016-35050 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34241-34796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 342 41-34796 bp Feature: gene Location: 35206-36843 bp Feature: domain Description: SR_TndX_transposase Location: 35233-35656 bp Feature: domain Description: SR_TndX_transposase Location: 352 33-35656 bp Feature: domain Description: Recombinase Location: 35758-36127 bp Feature: domain Description: Recombinase Location: 35758-3612 7 bp Feature: domain Description: Zn_ribbon_recom Location: 36160-36340 bp Feature: domain Description: Zn_ribbon_recom Location: 36160-36340 bp Feature: domain Description: DUF4368 Location: 36613-36808 bp Feature: domain Description: DUF4368 Location: 36613-36808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPRTase (pfam14681), RVT-Retrons, SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)