myRT

myRT report for GCA_002549985.1_ASM254998v1

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Seq: NMTX01000008.1 Faecalibacterium prausnitzii strain CNCM I 4574 NODE_1_length_533005_cov_40.6149_ID_889, whole genome shotgun sequence (533005 bp)
Overview 1 RT 1: 41441-45176 bp 2 RT 2: 247116-252808 bp Neighborhood of RT #1 [41441, 45176] RVT-Retrons RVT-Retrons ThiF Neighborhood of RT #2 [247116, 252808] Eco57I HTH_XRE RVT-UG2 CxxCG_CxxCG_HTH GepA Feature: gene Location: 41441-41581 bp Feature: gene Location: 41598-41945 bp Feature: gene Location: 41978-43210 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42239-42416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42239-4241 6 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42473-42920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42473-42920 bp Feature: gene Location: 43516-44196 bp Feature: domain Description: ThiF Location: 43561-44140 bp Feature: domain Description: ThiF Location: 43561 -441 40 bp Feature: gene Location: 44211-45176 bp Feature: gene Location: 247116-249152 bp Feature: domain Description: Eco57I Location: 248100-248391 bp Feature: domain Description: Eco57I Location: 2481 00-248391 bp Feature: gene Location: 249326-249628 bp Feature: domain Description: HTH_XRE Location: 249335-249506 bp Feature: domain Description: HTH_XRE Location: 249335-249506 bp Feature: gene Location: 249687-251003 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 249885-250716 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 249885-25071 6 bp Feature: gene Location: 251399-252394 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 251423-251798 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 251 423-251 798 bp Feature: domain Description: GepA Location: 251936-252323 bp Feature: domain Description: GepA Location: 251 936-252323 bp Feature: gene Location: 252422-252808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ThiF (pfam00899), Eco57I (pfam07669), HTH_XRE (smart00530), RVT-UG2, CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600)

Seq: NMTX01000025.1 Faecalibacterium prausnitzii strain CNCM I 4574 NODE_3_length_309895_cov_65.5632_ID_5347, whole genome shotgun sequence (309895 bp)
Overview 1 RT 1: 74227-76893 bp Neighborhood of RT #1 [74227, 76919] RVT-DGRs COG4877 Feature: gene Location: 74227-74400 bp Feature: gene Location: 74416-74751 bp Feature: gene Location: 74703-75884 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74982-75588 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74982 -75588 bp Feature: gene Location: 76269-76727 bp Feature: gene Location: 76734-76919 bp Feature: domain Description: COG4877 Location: 76743-76893 bp Feature: domain Description: COG4877 Location: 76743-76893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, COG4877 (Uncharacterized protein )

Seq: NMTX01000030.1 Faecalibacterium prausnitzii strain CNCM I 4574 NODE_6_length_220591_cov_42.1363_ID_1027, whole genome shotgun sequence (220591 bp)
Overview 1 RT 1: 102898-106774 bp Neighborhood of RT #1 [102898, 106833] Avd_like RVT-DGRs bZIP_2 Feature: gene Location: 102898-103257 bp Feature: domain Description: Avd_like Location: 102949-103234 bp Feature: domain Description: Avd_like Location: 102949-103 23 4 bp Feature: gene Location: 103290-103427 bp Feature: gene Location: 103616-104869 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 103916-104561 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 103 916-104561 bp Feature: gene Location: 104781-106637 bp Feature: gene Location: 106630-106833 bp Feature: domain Description: bZIP_2 Location: 106687-106774 bp Feature: domain Description: bZIP_2 Location: 106687-106774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, bZIP_2 (pfam07716)