myRT

myRT report for GCA_002550035.1_ASM255003v1

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Seq: NOUV01000019.1 Faecalibacterium prausnitzii strain AHMP21 AHMP21_contig_19, whole genome shotgun sequence (418783 bp)
Overview 1 RT 1: 108258-114988 bp 2 RT 2: 376436-387888 bp Neighborhood of RT #1 [108258, 115008] PrgI TraC-F-type RVT_N RVT-GII GIIM TraC-F-type Spr Neighborhood of RT #2 [376436, 387926] MutS_I YtxK COG4646 RVT-GII HNHc COG4646 KOG0390 MobC Feature: gene Location: 108258-108620 bp Feature: domain Description: PrgI Location: 108279-108549 bp Feature: domain Description: PrgI Location: 1 08279-1 08549 bp Feature: gene Location: 108595-110001 bp Feature: domain Description: TraC-F-type Location: 109042-109984 bp Feature: domain Description: TraC-F-type Location: 1 09042-1 09984 bp Feature: gene Location: 110587-112269 bp Feature: RT Description: RVT_N Location: 110665-110908 bp Feature: RT Description: RVT_N Location: 1 1 0665-1 1 0908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110953-111616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 0953-1 1 1 61 6 bp Feature: domain Description: GIIM Note: maturase Location: 111667-111904 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 667-1 1 1 904 bp Feature: gene Location: 112274-113278 bp Feature: domain Description: TraC-F-type Location: 112358-113084 bp Feature: domain Description: TraC-F-type Location: 1 1 2358-1 1 3084 bp Feature: gene Location: 113275-115008 bp Feature: domain Description: Spr Location: 114652-114988 bp Feature: domain Description: Spr Location: 1 1 4652-1 1 4988 bp Feature: gene Location: 376436-376600 bp Feature: gene Location: 376682-382813 bp Feature: domain Description: MutS_I Location: 378608-378851 bp Feature: domain Description: MutS_I Location: 378608-378851 bp Feature: domain Description: YtxK Location: 379970-380729 bp Feature: domain Description: YtxK Location: 379970-380729 bp Feature: domain Description: COG4646 Location: 380780-382799 bp Feature: domain Description: COG4646 Location: 380780-382799 bp Feature: gene Location: 383513-385429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383837-384551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383837-384551 bp Feature: domain Description: HNHc Note: nucleases Location: 385181-385352 bp Feature: domain Description: HNHc Note: nucleases Location: 3851 81 -385352 bp Feature: gene Location: 385657-387597 bp Feature: domain Description: COG4646 Location: 385660-386221 bp Feature: domain Description: COG4646 Location: 385660-386221 bp Feature: domain Description: KOG0390 Location: 386494-386749 bp Feature: domain Description: KOG0390 Location: 386494-386749 bp Feature: gene Location: 387666-387926 bp Feature: domain Description: MobC Location: 387789-387888 bp Feature: domain Description: MobC Location: 387789-387888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Spr (COG0791), MutS_I (pfam01624), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), HNHc (smart00507)
KOG0390 (KOG0390, DNA repair protein, SNF2 family ), MobC (pfam05713)

Seq: NOUV01000005.1 Faecalibacterium prausnitzii strain AHMP21 AHMP21_contig_5, whole genome shotgun sequence (467782 bp)
Overview 1 RT 1: 261723-264918 bp Neighborhood of RT #1 [261723, 264918] COG4877 RVT-DGRs ChiA1_BD ChtBD3 Feature: gene Location: 261723-261911 bp Feature: domain Description: COG4877 Location: 261732-261870 bp Feature: domain Description: COG4877 Location: 2 61732 -2 61870 bp Feature: gene Location: 261918-262379 bp Feature: gene Location: 262780-263952 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 263059-263674 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 63059-2 63674 bp Feature: gene Location: 263913-264530 bp Feature: domain Description: ChiA1_BD Location: 264228-264357 bp Feature: domain Description: ChiA1_BD Location: 2 642 2 8-2 64357 bp Feature: domain Description: ChtBD3 Location: 264417-264498 bp Feature: domain Description: ChtBD3 Location: 2 64417-2 64498 bp Feature: gene Location: 264520-264918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4877 (Uncharacterized protein ), RVT-DGRs, ChiA1_BD (cd12214), ChtBD3 (smart00495)