myRT

myRT report for GCA_002550145.1_ASM255014v1

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Seq: NVPN01000004.1 Bacillus pseudomycoides strain AFS098856 AFS098856_104_D1_Contig12_140523, whole genome shotgun sequence (45271 bp)
Overview 1 RT 1: 9244-15834 bp Neighborhood of RT #1 [9244, 15857] AcrR PRK06752 RVT-GII GIIM HNHc BaxI_1 Uup ABC_tran_CTD Feature: gene Location: 9244-9618 bp Feature: domain Description: AcrR Location: 9268-9541 bp Feature: domain Description: AcrR Location: 9268-9541 bp Feature: gene Location: 9818-9976 bp Feature: domain Description: PRK06752 Location: 9824-9971 bp Feature: domain Description: PRK06752 Location: 9824-9971 bp Feature: gene Location: 10341-12203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10635-11340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0635-1 1 340 bp Feature: domain Description: GIIM Note: maturase Location: 11439-11646 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 439-1 1 646 bp Feature: domain Description: HNHc Note: nucleases Location: 11949-12123 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 949-1 21 23 bp Feature: gene Location: 13158-13889 bp Feature: domain Description: BaxI_1 Location: 13173-13878 bp Feature: domain Description: BaxI_1 Location: 1 31 73-1 3878 bp Feature: gene Location: 13965-15857 bp Feature: domain Description: Uup Location: 13968-15558 bp Feature: domain Description: Uup Location: 1 3968-1 5558 bp Feature: domain Description: ABC_tran_CTD Location: 15639-15834 bp Feature: domain Description: ABC_tran_CTD Location: 1 5639-1 5834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), BaxI_1 (pfam12811), Uup (COG0488), ABC_tran_CTD (pfam16326), AcrR (COG1309), PRK06752 (single-stranded DNA-binding protein; Validated)

Seq: NVPN01000255.1 Bacillus pseudomycoides strain AFS098856 AFS098856_104_D1_Contig142_140523, whole genome shotgun sequence (14926 bp)
Overview 1 RT 1: 8388-12263 bp Neighborhood of RT #1 [8388, 12263] TraC-F-type RVT-GII Intron_maturas2 HNHc Spr Feature: gene Location: 8388-9149 bp Feature: gene Location: 9156-10145 bp Feature: domain Description: TraC-F-type Location: 9162-10095 bp Feature: domain Description: TraC-F-type Location: 9162 -10095 bp Feature: gene Location: 10218-11030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10224-10305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 2 4-10305 bp Feature: domain Description: Intron_maturas2 Location: 10377-10674 bp Feature: domain Description: Intron_maturas2 Location: 10377-10674 bp Feature: domain Description: HNHc Note: nucleases Location: 10851-11004 bp Feature: domain Description: HNHc Note: nucleases Location: 10851-11004 bp Feature: gene Location: 11159-11614 bp Feature: domain Description: Spr Location: 11207-11597 bp Feature: domain Description: Spr Location: 112 07-11597 bp Feature: gene Location: 11664-12263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spr (COG0791), TraC-F-type (TIGR02746)

Seq: NVPN01000040.1 Bacillus pseudomycoides strain AFS098856 AFS098856_104_D1_Contig40_140523, whole genome shotgun sequence (2303 bp)
Overview 1 RT 1: 105-2300 bp Neighborhood of RT #1 [105, 2300] RVT_N RVT-GII GIIM Feature: gene Location: 105-1754 bp Feature: RT Description: RVT_N Location: 153-399 bp Feature: RT Description: RVT_N Location: 153 -3 99 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453-1113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453 -1113 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1413 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1413 bp Feature: gene Location: 2130-2300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NVPN01000058.1 Bacillus pseudomycoides strain AFS098856 AFS098856_104_D1_Contig58_140523, whole genome shotgun sequence (2564 bp)
Overview 1 RT 1: 624-2412 bp Neighborhood of RT #1 [624, 2441] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 624-2441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 888-1719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 888-1719 bp Feature: domain Description: Intron_maturas2 Location: 1794-2088 bp Feature: domain Description: Intron_maturas2 Location: 1794 -2088 bp Feature: domain Description: HNHc Note: nucleases Location: 2259-2412 bp Feature: domain Description: HNHc Note: nucleases Location: 2259-24 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NVPN01000204.1 Bacillus pseudomycoides strain AFS098856 AFS098856_104_D1_Contig91_140523, whole genome shotgun sequence (30126 bp)
Overview 1 RT 1: 2-5506 bp Neighborhood of RT #1 [2, 5715] DDE_Tnp_1 RVT-GII GIIM DUF4352 DUF5105 DUF3994 Feature: gene Location: 2-1474 bp Feature: domain Description: DDE_Tnp_1 Location: 401-1199 bp Feature: domain Description: DDE_Tnp_1 Location: 401-1199 bp Feature: gene Location: 1504-1791 bp Feature: gene Location: 2085-3002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2289-2448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2289-2448 bp Feature: domain Description: GIIM Note: maturase Location: 2700-2916 bp Feature: domain Description: GIIM Note: maturase Location: 2700-2916 bp Feature: gene Location: 3466-4521 bp Feature: domain Description: DUF4352 Location: 3580-3901 bp Feature: domain Description: DUF435 2 Location: 35 80-3901 bp Feature: domain Description: DUF5105 Location: 3967-4516 bp Feature: domain Description: DUF5 105 Location: 3967-45 16 bp Feature: gene Location: 4753-5715 bp Feature: domain Description: DUF3994 Location: 5197-5506 bp Feature: domain Description: DUF3994 Location: 5 197-5 5 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), DUF4352 (pfam11611), DUF5105 (pfam17118), DUF3994 (pfam13159)