myRT

myRT report for GCA_002550455.1_ASM255045v1

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Seq: NVLS01000018.1 Bacillus thuringiensis strain AFS095989 AFS095989_109_E4_Contig18_140523, whole genome shotgun sequence (95911 bp)
Overview 1 RT 1: 45398-50905 bp Neighborhood of RT #1 [45398, 50979] DDE_Tnp_1 RVT-GII RVT-GII PRK06760 SalY Feature: gene Location: 45398-45841 bp Feature: gene Location: 45801-46292 bp Feature: domain Description: DDE_Tnp_1 Location: 45825-46071 bp Feature: domain Description: DDE_Tnp_1 Location: 45825-46071 bp Feature: gene Location: 46686-47198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46734-46827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46734-46827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46899-47097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46899-47097 bp Feature: gene Location: 48292-48987 bp Feature: domain Description: PRK06760 Location: 48295-48967 bp Feature: domain Description: PRK06760 Location: 48295-48967 bp Feature: gene Location: 49015-50979 bp Feature: domain Description: SalY Location: 49198-50905 bp Feature: domain Description: SalY Location: 491 98-50905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, PRK06760 (hypothetical protein; Provisional), SalY (COG0577)

Seq: NVLS01000027.1 Bacillus thuringiensis strain AFS095989 AFS095989_109_E4_Contig27_140523, whole genome shotgun sequence (47517 bp)
Overview 1 RT 1: 38676-45526 bp Neighborhood of RT #1 [38676, 45526] RVT_N RVT-GII GIIM HNHc DEXDc Feature: gene Location: 38676-39389 bp Feature: gene Location: 39406-40113 bp Feature: gene Location: 40230-42038 bp Feature: RT Description: RVT_N Location: 40281-40521 bp Feature: RT Description: RVT_N Location: 402 81-4052 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40581-41235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40581-412 35 bp Feature: domain Description: GIIM Note: maturase Location: 41298-41532 bp Feature: domain Description: GIIM Note: maturase Location: 412 98-41532 bp Feature: domain Description: HNHc Note: nucleases Location: 41745-41892 bp Feature: domain Description: HNHc Note: nucleases Location: 41745-41892 bp Feature: gene Location: 42642-45275 bp Feature: domain Description: DEXDc Location: 43470-44421 bp Feature: domain Description: DEXDc Location: 43470-4442 1 bp Feature: gene Location: 45299-45526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXDc (smart00487)

Seq: NVLS01000044.1 Bacillus thuringiensis strain AFS095989 AFS095989_109_E4_Contig44_140523, whole genome shotgun sequence (11661 bp)
Overview 1 RT 1: 7290-11629 bp Neighborhood of RT #1 [7290, 11658] HTH_XRE DUF2207 TraG-D_C Ftsk_gamma RVT-GII Intron_maturas2 HNHc Feature: gene Location: 7290-7850 bp Feature: domain Description: HTH_XRE Location: 7302-7473 bp Feature: domain Description: HTH_XRE Location: 73 02-7473 bp Feature: domain Description: DUF2207 Location: 7500-7695 bp Feature: domain Description: DUF2207 Location: 7500-7695 bp Feature: gene Location: 8103-9956 bp Feature: domain Description: TraG-D_C Location: 8244-8601 bp Feature: domain Description: TraG-D_C Location: 8244-8601 bp Feature: domain Description: Ftsk_gamma Location: 9009-9189 bp Feature: domain Description: Ftsk_gamma Location: 9009-9189 bp Feature: gene Location: 10060-11658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10111-10933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10111-1093 3 bp Feature: domain Description: Intron_maturas2 Location: 11014-11308 bp Feature: domain Description: Intron_maturas2 Location: 11014-113 08 bp Feature: domain Description: HNHc Note: nucleases Location: 11455-11629 bp Feature: domain Description: HNHc Note: nucleases Location: 11455-11629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_XRE (smart00530), DUF2207 (pfam09972), TraG-D_C (pfam12696), Ftsk_gamma (smart00843)

Seq: NVLS01000061.1 Bacillus thuringiensis strain AFS095989 AFS095989_109_E4_Contig61_140523, whole genome shotgun sequence (79286 bp)
Overview 1 RT 1: 33190-39546 bp Neighborhood of RT #1 [33190, 39546] COG3183 RVT-Retrons Feature: gene Location: 33190-34356 bp Feature: domain Description: COG3183 Location: 33997-34336 bp Feature: domain Description: COG3183 Location: 33997-34 336 bp Feature: gene Location: 34863-35135 bp Feature: gene Location: 36449-37405 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36488-37091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 364 88-37091 bp Feature: gene Location: 37406-38581 bp Feature: gene Location: 38848-39546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3183 (Predicted restriction endonuclease, HNH family ), RVT-Retrons

Seq: NVLS01000076.1 Bacillus thuringiensis strain AFS095989 AFS095989_109_E4_Contig76_140523, whole genome shotgun sequence (7905 bp)
Overview 1 RT 1: 3033-7876 bp Neighborhood of RT #1 [3033, 7902] rpsA TraG-D_C Ftsk_gamma Ftsk_gamma RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3033-4016 bp Feature: domain Description: rpsA Location: 3300-3837 bp Feature: domain Description: rpsA Location: 3300-3837 bp Feature: gene Location: 4251-6110 bp Feature: domain Description: TraG-D_C Location: 4302-4662 bp Feature: domain Description: TraG-D_C Location: 4302-4662 bp Feature: domain Description: Ftsk_gamma Location: 5088-5268 bp Feature: domain Description: Ftsk_gamma Location: 5 088-5 268 bp Feature: domain Description: Ftsk_gamma Location: 5433-5574 bp Feature: domain Description: Ftsk_gamma Location: 5 433-5 5 74 bp Feature: gene Location: 6304-7902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6355-7180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 635 5 -7180 bp Feature: domain Description: Intron_maturas2 Location: 7261-7552 bp Feature: domain Description: Intron_maturas2 Location: 7261-75 5 2 bp Feature: domain Description: HNHc Note: nucleases Location: 7699-7876 bp Feature: domain Description: HNHc Note: nucleases Location: 7699-7876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)