myRT

myRT report for GCA_002551005.1_ASM255100v1

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Seq: NVOY01000034.1 Bacillus pseudomycoides strain AFS090198 AFS090198_96_H1_Contig34_140514, whole genome shotgun sequence (60141 bp)
Overview 1 RT 1: 1433-7201 bp Neighborhood of RT #1 [1433, 7215] YafY RVT-GII DinB Ndh Feature: gene Location: 1433-2377 bp Feature: domain Description: YafY Location: 1436-2372 bp Feature: domain Description: YafY Location: 1 436-2372 bp Feature: gene Location: 2936-3064 bp Feature: gene Location: 3318-5249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3639-4374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3639-4374 bp Feature: gene Location: 5375-5926 bp Feature: domain Description: DinB Location: 5435-5900 bp Feature: domain Description: DinB Location: 5435-5900 bp Feature: gene Location: 6145-7215 bp Feature: domain Description: Ndh Location: 6148-7201 bp Feature: domain Description: Ndh Location: 61 48-7201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafY (COG2378), RVT-GII, DinB (pfam05163), Ndh (COG1252)

Seq: NVOY01000048.1 Bacillus pseudomycoides strain AFS090198 AFS090198_96_H1_Contig48_140514, whole genome shotgun sequence (26809 bp)
Overview 1 RT 1: 23094-26802 bp Neighborhood of RT #1 [23094, 26807] DUF1963 CYK3 RVT-GII Feature: gene Location: 23094-23867 bp Feature: domain Description: DUF1963 Location: 23226-23859 bp Feature: domain Description: DUF1963 Location: 2 32 2 6-2 3859 bp Feature: gene Location: 24178-25341 bp Feature: domain Description: CYK3 Location: 24292-24985 bp Feature: domain Description: CYK3 Location: 2 42 92 -2 4985 bp Feature: gene Location: 25905-26807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26211-26802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 11-2 6802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1963 (pfam09234), CYK3 (COG5279), RVT-GII

Seq: NVOY01000004.1 Bacillus pseudomycoides strain AFS090198 AFS090198_96_H1_Contig4_140514, whole genome shotgun sequence (384240 bp)
Overview 1 RT 1: 345589-351427 bp Neighborhood of RT #1 [345589, 351427] Acetyltransf_10 UvrD RVT-GII Intron_maturas2 HNHc SF1_C_UvrD Feature: gene Location: 345589-346011 bp Feature: domain Description: Acetyltransf_10 Location: 345652-346006 bp Feature: domain Description: Acetyltransf_10 Location: 3 45652-3 46006 bp Feature: gene Location: 346334-347239 bp Feature: domain Description: UvrD Location: 346511-347231 bp Feature: domain Description: UvrD Location: 3 46511-3 4723 1 bp Feature: gene Location: 347804-349642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348092-348923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 48092-3 48923 bp Feature: domain Description: Intron_maturas2 Location: 349118-349340 bp Feature: domain Description: Intron_maturas2 Location: 3 49118-3 493 40 bp Feature: domain Description: HNHc Note: nucleases Location: 349457-349631 bp Feature: domain Description: HNHc Note: nucleases Location: 3 49457-3 4963 1 bp Feature: gene Location: 349944-350945 bp Feature: domain Description: SF1_C_UvrD Location: 349980-350862 bp Feature: domain Description: SF1_C_UvrD Location: 3 49980-3 50862 bp Feature: gene Location: 351197-351427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), UvrD (COG0210), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SF1_C_UvrD (cd18807)

Seq: NVOY01000088.1 Bacillus pseudomycoides strain AFS090198 AFS090198_96_H1_Contig88_140514, whole genome shotgun sequence (10656 bp)
Overview 1 RT 1: 6522-10430 bp Neighborhood of RT #1 [6522, 10430] FliA RVT-GII HNHc Feature: gene Location: 6522-6875 bp Feature: gene Location: 7139-7372 bp Feature: domain Description: FliA Location: 7172-7349 bp Feature: domain Description: FliA Location: 7172-734 9 bp Feature: gene Location: 8010-9809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8307-9000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8307-9000 bp Feature: domain Description: HNHc Note: nucleases Location: 9558-9696 bp Feature: domain Description: HNHc Note: nucleases Location: 9558-9696 bp Feature: gene Location: 9928-10149 bp Feature: gene Location: 10236-10430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FliA (COG1191), RVT-GII, HNHc (smart00507)

Seq: NVOY01000090.1 Bacillus pseudomycoides strain AFS090198 AFS090198_96_H1_Contig90_140514, whole genome shotgun sequence (2896 bp)
Overview 1 RT 1: 186-2040 bp Neighborhood of RT #1 [186, 2174] RVT-GII HNHc Feature: gene Location: 186-2174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 585-1311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 85 -1311 bp Feature: domain Description: HNHc Note: nucleases Location: 1872-2040 bp Feature: domain Description: HNHc Note: nucleases Location: 1872-2040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)