myRT

myRT report for GCA_002553115.1_ASM255311v1

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Seq: NVOF01000005.1 Bacillus pseudomycoides strain AFS095135 AFS095135_100_B5_Contig5_140514, whole genome shotgun sequence (30093 bp)
Overview 1 RT 1: 6949-17175 bp 2 RT 2: 25768-30019 bp Neighborhood of RT #1 [6949, 17276] RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM HNHc MobL Neighborhood of RT #2 [25768, 30090] T4SS-DNA_transf PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 Rve Feature: gene Location: 6949-7965 bp Feature: gene Location: 8027-9298 bp Feature: gene Location: 9324-11177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9588-10428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9588-1 0428 bp Feature: domain Description: Intron_maturas2 Location: 10518-10866 bp Feature: domain Description: Intron_maturas2 Location: 1 051 8-1 0866 bp Feature: domain Description: HNHc Note: nucleases Location: 10959-11124 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0959-1 1 1 24 bp Feature: gene Location: 11794-12492 bp Feature: gene Location: 12485-12769 bp Feature: gene Location: 12862-14706 bp Feature: RT Description: RVT_N Location: 12919-13162 bp Feature: RT Description: RVT_N Location: 1 291 9-1 31 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13219-13894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 321 9-1 3894 bp Feature: domain Description: GIIM Note: maturase Location: 13969-14203 bp Feature: domain Description: GIIM Note: maturase Location: 1 3969-1 4203 bp Feature: domain Description: HNHc Note: nucleases Location: 14404-14575 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4404-1 4575 bp Feature: gene Location: 15604-16071 bp Feature: gene Location: 16068-17276 bp Feature: domain Description: MobL Location: 16107-17175 bp Feature: domain Description: MobL Location: 1 61 07-1 71 75 bp Feature: gene Location: 25768-26079 bp Feature: domain Description: T4SS-DNA_transf Location: 25795-25972 bp Feature: domain Description: T4SS-DNA_transf Location: 25795-25972 bp Feature: gene Location: 26091-26345 bp Feature: domain Description: PolY_Pol_V_umuC Location: 26094-26340 bp Feature: domain Description: PolY_Pol_V_umuC Location: 26094-26340 bp Feature: gene Location: 27012-28823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27276-28107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27276-281 07 bp Feature: domain Description: Intron_maturas2 Location: 28185-28521 bp Feature: domain Description: Intron_maturas2 Location: 281 85-28521 bp Feature: domain Description: HNHc Note: nucleases Location: 28617-28794 bp Feature: domain Description: HNHc Note: nucleases Location: 2861 7-28794 bp Feature: gene Location: 29086-29346 bp Feature: domain Description: PRK03103 Location: 29101-29335 bp Feature: domain Description: PRK031 03 Location: 291 01 -29335 bp Feature: gene Location: 29479-30090 bp Feature: domain Description: Rve Location: 29482-30019 bp Feature: domain Description: Rve Location: 29482-3001 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), MobL (pfam18555), T4SS-DNA_transf (pfam02534), PolY_Pol_V_umuC (cd01700), PRK03103 (DNA polymerase IV; Reviewed), Rve (COG3316)

Seq: NVOF01000085.1 Bacillus pseudomycoides strain AFS095135 AFS095135_100_B5_Contig85_140514, whole genome shotgun sequence (114155 bp)
Overview 1 RT 1: 102437-108542 bp Neighborhood of RT #1 [102437, 108613] DUF3994 DUF4352 DUF5105 RVT-GII GIIM MFS_MefA_like Feature: gene Location: 102437-103399 bp Feature: domain Description: DUF3994 Location: 102881-103190 bp Feature: domain Description: DUF3994 Location: 102 881-103190 bp Feature: gene Location: 103632-104687 bp Feature: domain Description: DUF4352 Location: 103746-104067 bp Feature: domain Description: DUF4352 Location: 103746-104067 bp Feature: domain Description: DUF5105 Location: 104133-104682 bp Feature: domain Description: DUF5105 Location: 104133-104682 bp Feature: gene Location: 105358-106068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105562-105721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105562 -10572 1 bp Feature: domain Description: GIIM Note: maturase Location: 105973-106066 bp Feature: domain Description: GIIM Note: maturase Location: 105973-106066 bp Feature: gene Location: 106362-106553 bp Feature: gene Location: 107240-108613 bp Feature: domain Description: MFS_MefA_like Location: 107402-108542 bp Feature: domain Description: MFS_MefA_like Location: 107402 -108542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173)