myRT

myRT report for GCA_002553275.1_ASM255327v1

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Seq: NVOQ01000100.1 Bacillus pseudomycoides strain AFS092115 AFS092115_115_B9_Contig100_140618, whole genome shotgun sequence (12032 bp)
Overview 1 RT 1: 334-6311 bp Neighborhood of RT #1 [334, 6311] AAA T4SS-DNA_transf TraG_VirD4 RVT-GII Intron_maturas2 HNHc TraG-D_C Feature: gene Location: 334-762 bp Feature: domain Description: AAA Location: 370-703 bp Feature: domain Description: AAA Location: 370-703 bp Feature: gene Location: 860-2623 bp Feature: domain Description: T4SS-DNA_transf Location: 1322-2117 bp Feature: domain Description: T4SS-DNA_transf Location: 1 322-21 1 7 bp Feature: domain Description: TraG_VirD4 Location: 2399-2591 bp Feature: domain Description: TraG_VirD4 Location: 2399-2591 bp Feature: gene Location: 3173-4987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3437-4265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3437-4265 bp Feature: domain Description: Intron_maturas2 Location: 4343-4637 bp Feature: domain Description: Intron_maturas2 Location: 4343-4637 bp Feature: domain Description: HNHc Note: nucleases Location: 4784-4961 bp Feature: domain Description: HNHc Note: nucleases Location: 4784-4961 bp Feature: gene Location: 5095-6111 bp Feature: domain Description: TraG-D_C Location: 5104-5416 bp Feature: domain Description: TraG-D_C Location: 51 04-541 6 bp Feature: gene Location: 6111-6311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AAA (TIGR00769), T4SS-DNA_transf (pfam02534), TraG_VirD4

Seq: NVOQ01000230.1 Bacillus pseudomycoides strain AFS092115 AFS092115_115_B9_Contig230_140618, whole genome shotgun sequence (743 bp)
Overview 1 RT 1: 2-742 bp Neighborhood of RT #1 [2, 741] RVT-GII Feature: gene Location: 2-169 bp Feature: gene Location: 463-741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667-742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667-742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NVOQ01000032.1 Bacillus pseudomycoides strain AFS092115 AFS092115_115_B9_Contig32_140618, whole genome shotgun sequence (7219 bp)
Overview 1 RT 1: 1-1374 bp Neighborhood of RT #1 [1, 1376] RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 1-657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-103 bp Feature: domain Description: GIIM Note: maturase Location: 355-571 bp Feature: domain Description: GIIM Note: maturase Location: 3 55-571 bp Feature: gene Location: 806-958 bp Feature: gene Location: 981-1376 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1227-1374 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1227-13 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: NVOQ01000038.1 Bacillus pseudomycoides strain AFS092115 AFS092115_115_B9_Contig38_140618, whole genome shotgun sequence (5597 bp)
Overview 1 RT 1: 789-5590 bp Neighborhood of RT #1 [789, 5595] RVT-GII HNHc Lysozyme_like RVT-GII Intron_maturas2 HNHc Spr Feature: gene Location: 789-2570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 7-1752 bp Feature: domain Description: HNHc Note: nucleases Location: 2313-2448 bp Feature: domain Description: HNHc Note: nucleases Location: 2313-24 4 8 bp Feature: gene Location: 2583-2855 bp Feature: domain Description: Lysozyme_like Location: 2682-2844 bp Feature: domain Description: Lysozyme_like Location: 2682-284 4 bp Feature: gene Location: 3428-5251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3692-4526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3692-4 526 bp Feature: domain Description: Intron_maturas2 Location: 4598-4898 bp Feature: domain Description: Intron_maturas2 Location: 4 598-4 898 bp Feature: domain Description: HNHc Note: nucleases Location: 5072-5225 bp Feature: domain Description: HNHc Note: nucleases Location: 5072-5225 bp Feature: gene Location: 5380-5595 bp Feature: domain Description: Spr Location: 5428-5590 bp Feature: domain Description: Spr Location: 54 28-5590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lysozyme_like (pfam13702), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spr (COG0791)

Seq: NVOQ01000053.1 Bacillus pseudomycoides strain AFS092115 AFS092115_115_B9_Contig53_140618, whole genome shotgun sequence (2314 bp)
Overview 1 RT 1: 528-1872 bp Neighborhood of RT #1 [528, 2213] RVT_N RVT-GII GIIM Feature: gene Location: 528-2213 bp Feature: RT Description: RVT_N Location: 612-858 bp Feature: RT Description: RVT_N Location: 612-85 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-1572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-15 72 bp Feature: domain Description: GIIM Note: maturase Location: 1638-1872 bp Feature: domain Description: GIIM Note: maturase Location: 1638-1872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)