myRT

myRT report for GCA_002554885.1_ASM255488v1

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Seq: NUCG01000020.1 Bacillus pseudomycoides strain AFS018958 AFS018958_98_C10_Contig20_140514, whole genome shotgun sequence (54875 bp)
Overview 1 RT 1: 20125-25366 bp Neighborhood of RT #1 [20125, 25398] Rve PDDEXK_2 RVT_N RVT-GII GIIM HNHc PDDEXK_2 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 20125-20379 bp Feature: domain Description: Rve Location: 20134-20377 bp Feature: domain Description: Rve Location: 201 34-20377 bp Feature: gene Location: 20752-21021 bp Feature: domain Description: PDDEXK_2 Location: 20779-21010 bp Feature: domain Description: PDDEXK_2 Location: 20779-21 01 0 bp Feature: gene Location: 21596-23392 bp Feature: RT Description: RVT_N Location: 21644-21887 bp Feature: RT Description: RVT_N Location: 21 644-21 887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21944-22613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 944-2261 3 bp Feature: domain Description: GIIM Note: maturase Location: 22673-22907 bp Feature: domain Description: GIIM Note: maturase Location: 22673-22907 bp Feature: domain Description: HNHc Note: nucleases Location: 23108-23273 bp Feature: domain Description: HNHc Note: nucleases Location: 231 08-23273 bp Feature: gene Location: 23382-23744 bp Feature: domain Description: PDDEXK_2 Location: 23502-23727 bp Feature: domain Description: PDDEXK_2 Location: 23502-23727 bp Feature: gene Location: 23827-25398 bp Feature: domain Description: zf-IS66 Location: 24199-24331 bp Feature: domain Description: zf-IS66 Location: 241 99-24331 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24397-25222 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24397-25222 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25243-25366 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25243-25366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: NUCG01000003.1 Bacillus pseudomycoides strain AFS018958 AFS018958_98_C10_Contig3_140514, whole genome shotgun sequence (122164 bp)
Overview 1 RT 1: 115552-121656 bp Neighborhood of RT #1 [115552, 121727] DUF3994 DUF4352 DUF5105 RVT-GII GIIM MFS_MefA_like Feature: gene Location: 115552-116514 bp Feature: domain Description: DUF3994 Location: 115996-116305 bp Feature: domain Description: DUF3994 Location: 115996-116305 bp Feature: gene Location: 116747-117802 bp Feature: domain Description: DUF4352 Location: 116861-117182 bp Feature: domain Description: DUF4352 Location: 116861-117182 bp Feature: domain Description: DUF5105 Location: 117248-117797 bp Feature: domain Description: DUF5105 Location: 1172 48-117797 bp Feature: gene Location: 118264-119181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118468-118627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118468-11862 7 bp Feature: domain Description: GIIM Note: maturase Location: 118879-119095 bp Feature: domain Description: GIIM Note: maturase Location: 118879-119095 bp Feature: gene Location: 120354-121727 bp Feature: domain Description: MFS_MefA_like Location: 120516-121656 bp Feature: domain Description: MFS_MefA_like Location: 12 0516-12 1656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173)

Seq: NUCG01000059.1 Bacillus pseudomycoides strain AFS018958 AFS018958_98_C10_Contig59_140514, whole genome shotgun sequence (36559 bp)
Overview 1 RT 1: 16468-22116 bp 2 RT 2: 32390-36547 bp Neighborhood of RT #1 [16468, 22116] RVT-GII Intron_maturas2 HNHc DUF1738 Neighborhood of RT #2 [32390, 36558] T4SS-DNA_transf PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 Rve Feature: gene Location: 16468-17472 bp Feature: gene Location: 17534-18805 bp Feature: gene Location: 18831-20684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19095-19935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19095-1993 5 bp Feature: domain Description: Intron_maturas2 Location: 20025-20373 bp Feature: domain Description: Intron_maturas2 Location: 20025-203 73 bp Feature: domain Description: HNHc Note: nucleases Location: 20466-20631 bp Feature: domain Description: HNHc Note: nucleases Location: 20466-2063 1 bp Feature: gene Location: 21396-21773 bp Feature: domain Description: DUF1738 Location: 21540-21693 bp Feature: domain Description: DUF173 8 Location: 21540-21693 bp Feature: gene Location: 21835-22116 bp Feature: gene Location: 32390-32701 bp Feature: domain Description: T4SS-DNA_transf Location: 32417-32594 bp Feature: domain Description: T4SS-DNA_transf Location: 3 2417-3 2594 bp Feature: gene Location: 32713-32967 bp Feature: domain Description: PolY_Pol_V_umuC Location: 32716-32962 bp Feature: domain Description: PolY_Pol_V_umuC Location: 3 2716-3 2962 bp Feature: gene Location: 33634-35445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33898-34729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 898-3 4729 bp Feature: domain Description: Intron_maturas2 Location: 34810-35143 bp Feature: domain Description: Intron_maturas2 Location: 3 4810-3 5143 bp Feature: domain Description: HNHc Note: nucleases Location: 35239-35416 bp Feature: domain Description: HNHc Note: nucleases Location: 3 523 9-3 5416 bp Feature: gene Location: 35708-35968 bp Feature: domain Description: PRK03103 Location: 35723-35957 bp Feature: domain Description: PRK03 103 Location: 3 5723 -3 5957 bp Feature: gene Location: 36085-36558 bp Feature: domain Description: Rve Location: 36088-36547 bp Feature: domain Description: Rve Location: 3 6088-3 6547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1738 (pfam08401), T4SS-DNA_transf (pfam02534), PolY_Pol_V_umuC (cd01700), PRK03103 (DNA polymerase IV; Reviewed), Rve (COG3316)

Seq: NUCG01000063.1 Bacillus pseudomycoides strain AFS018958 AFS018958_98_C10_Contig63_140514, whole genome shotgun sequence (15096 bp)
Overview 1 RT 1: 1415-8304 bp Neighborhood of RT #1 [1415, 8304] COG5263 FN3 DUF3238 RVT_N RVT-GII GIIM Feature: gene Location: 1415-2143 bp Feature: gene Location: 2289-4229 bp Feature: domain Description: COG5263 Location: 2421-2721 bp Feature: domain Description: COG5263 Location: 24 21-2721 bp Feature: domain Description: FN3 Location: 2835-3051 bp Feature: domain Description: FN3 Location: 2835-3051 bp Feature: domain Description: DUF3238 Location: 3645-4095 bp Feature: domain Description: DUF3238 Location: 364 5-4 095 bp Feature: gene Location: 4955-6640 bp Feature: RT Description: RVT_N Location: 5039-5285 bp Feature: RT Description: RVT_N Location: 5039-5285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-5999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5339-5999 bp Feature: domain Description: GIIM Note: maturase Location: 6065-6299 bp Feature: domain Description: GIIM Note: maturase Location: 6065-6299 bp Feature: gene Location: 6861-7316 bp Feature: gene Location: 7333-8304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5263 (Glucan-binding domain (YG repeat) ), FN3 (smart00060), DUF3238 (pfam11579), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)