myRT

myRT report for GCA_002555415.1_ASM255541v1

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Seq: NUCK01000111.1 Bacillus pseudomycoides strain AFS018356 AFS018356_119_C6_Contig182_140618, whole genome shotgun sequence (386 bp)
Overview 1 RT 1: 1-334 bp Neighborhood of RT #1 [1, 384] RVT-GII Feature: gene Location: 1-384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NUCK01000184.1 Bacillus pseudomycoides strain AFS018356 AFS018356_119_C6_Contig57_140618, whole genome shotgun sequence (28776 bp)
Overview 1 RT 1: 71-6041 bp Neighborhood of RT #1 [71, 6151] Lysozyme_like Spr RVT-GII HNHc Lysozyme_like TraC-F-type TraC-F-type Feature: gene Location: 71-373 bp Feature: gene Location: 408-1142 bp Feature: domain Description: Lysozyme_like Location: 507-699 bp Feature: domain Description: Lysozyme_like Location: 507-699 bp Feature: domain Description: Spr Location: 735-1125 bp Feature: domain Description: Spr Location: 735-112 5 bp Feature: gene Location: 1155-2924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1401-2106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1401-2 106 bp Feature: domain Description: HNHc Note: nucleases Location: 2667-2802 bp Feature: domain Description: HNHc Note: nucleases Location: 2 667-2 802 bp Feature: gene Location: 3707-4207 bp Feature: domain Description: Lysozyme_like Location: 3893-4190 bp Feature: domain Description: Lysozyme_like Location: 3893-4190 bp Feature: gene Location: 4211-6151 bp Feature: domain Description: TraC-F-type Location: 4577-5165 bp Feature: domain Description: TraC-F-type Location: 4577-5165 bp Feature: domain Description: TraC-F-type Location: 5519-6041 bp Feature: domain Description: TraC-F-type Location: 5519-6041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Lysozyme_like (pfam13702), Spr (COG0791)

Seq: NUCK01000240.1 Bacillus pseudomycoides strain AFS018356 AFS018356_119_C6_Contig73_140618, whole genome shotgun sequence (28768 bp)
Overview 1 RT 1: 20395-24522 bp Neighborhood of RT #1 [20395, 24536] RimL RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 20395-20901 bp Feature: domain Description: RimL Location: 20407-20899 bp Feature: domain Description: RimL Location: 20407-20899 bp Feature: gene Location: 21135-21329 bp Feature: gene Location: 21665-22852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21830-22469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2183 0-22469 bp Feature: domain Description: GIIM Note: maturase Location: 22544-22769 bp Feature: domain Description: GIIM Note: maturase Location: 22544-22769 bp Feature: gene Location: 23147-23326 bp Feature: gene Location: 23478-24536 bp Feature: domain Description: DDE_Tnp_1 Location: 23838-24522 bp Feature: domain Description: DDE_Tnp_1 Location: 23 83 8-24522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)

Seq: NUCK01000242.1 Bacillus pseudomycoides strain AFS018356 AFS018356_119_C6_Contig75_140618, whole genome shotgun sequence (99688 bp)
Overview 1 RT 1: 3123-7404 bp Neighborhood of RT #1 [3123, 7409] MFS_MefA_like RVT-GII DUF4352 DUF5105 Feature: gene Location: 3123-4382 bp Feature: domain Description: MFS_MefA_like Location: 3171-4311 bp Feature: domain Description: MFS_MefA_like Location: 3171-4 311 bp Feature: gene Location: 4603-4785 bp Feature: gene Location: 5398-5895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5602-5716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5602-5716 bp Feature: gene Location: 6068-6226 bp Feature: gene Location: 6354-7409 bp Feature: domain Description: DUF4352 Location: 6468-6789 bp Feature: domain Description: DUF4 352 Location: 64 68-6789 bp Feature: domain Description: DUF5105 Location: 6855-7404 bp Feature: domain Description: DUF5105 Location: 6855-74 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MefA_like (cd06173), RVT-GII, DUF4352 (pfam11611), DUF5105 (pfam17118)