myRT

myRT report for GCA_002555685.1_ASM255568v1

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Seq: NUDW01000011.1 Bacillus pseudomycoides strain AFS009013 AFS009013_96_C6_Contig11_140514, whole genome shotgun sequence (28746 bp)
Overview 1 RT 1: 4211-8350 bp Neighborhood of RT #1 [4211, 8352] DDE_Tnp_1 RVT-GII GIIM RimL Feature: gene Location: 4211-5269 bp Feature: domain Description: DDE_Tnp_1 Location: 4571-5255 bp Feature: domain Description: DDE_Tnp_1 Location: 4571 -5255 bp Feature: gene Location: 5421-5600 bp Feature: gene Location: 5895-7082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6060-6699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6060-6699 bp Feature: domain Description: GIIM Note: maturase Location: 6774-6999 bp Feature: domain Description: GIIM Note: maturase Location: 6774-6999 bp Feature: gene Location: 7418-7612 bp Feature: gene Location: 7846-8352 bp Feature: domain Description: RimL Location: 7858-8350 bp Feature: domain Description: RimL Location: 7858-8350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), RimL (COG1670)

Seq: NUDW01000044.1 Bacillus pseudomycoides strain AFS009013 AFS009013_96_C6_Contig44_140514, whole genome shotgun sequence (53162 bp)
Overview 1 RT 1: 3299-7580 bp Neighborhood of RT #1 [3299, 7585] MFS_MefA_like RVT-GII DUF4352 DUF5105 Feature: gene Location: 3299-4558 bp Feature: domain Description: MFS_MefA_like Location: 3347-4487 bp Feature: domain Description: MFS_MefA_like Location: 3347-4487 bp Feature: gene Location: 4779-4961 bp Feature: gene Location: 5574-6071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5778-5892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5778-5892 bp Feature: gene Location: 6244-6402 bp Feature: gene Location: 6530-7585 bp Feature: domain Description: DUF4352 Location: 6644-6965 bp Feature: domain Description: DUF4352 Location: 6644-6965 bp Feature: domain Description: DUF5105 Location: 7031-7580 bp Feature: domain Description: DUF5105 Location: 7031-7580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MefA_like (cd06173), RVT-GII, DUF4352 (pfam11611), DUF5105 (pfam17118)

Seq: NUDW01000077.1 Bacillus pseudomycoides strain AFS009013 AFS009013_96_C6_Contig77_140514, whole genome shotgun sequence (12165 bp)
Overview 1 RT 1: 6776-12076 bp Neighborhood of RT #1 [6776, 12162] TraC-F-type TraC-F-type Lysozyme_like RVT-GII HNHc Lysozyme_like Feature: gene Location: 6776-8716 bp Feature: domain Description: TraC-F-type Location: 7142-7730 bp Feature: domain Description: TraC-F-type Location: 7142-773 0 bp Feature: domain Description: TraC-F-type Location: 8084-8606 bp Feature: domain Description: TraC-F-type Location: 8084-8606 bp Feature: gene Location: 8720-9220 bp Feature: domain Description: Lysozyme_like Location: 8906-9203 bp Feature: domain Description: Lysozyme_like Location: 8906-9203 bp Feature: gene Location: 10003-11772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10249-10954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10249-10954 bp Feature: domain Description: HNHc Note: nucleases Location: 11515-11650 bp Feature: domain Description: HNHc Note: nucleases Location: 11515-11650 bp Feature: gene Location: 11785-12162 bp Feature: domain Description: Lysozyme_like Location: 11884-12076 bp Feature: domain Description: Lysozyme_like Location: 11884-12076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Lysozyme_like (pfam13702), TraC-F-type (TIGR02746)