myRT

myRT report for GCA_002556235.1_ASM255623v1

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Seq: NUFH01000002.1 Bacillus pseudomycoides strain AFS000230 AFS000230_120_H12_Contig15_140618, whole genome shotgun sequence (33057 bp)
Overview 1 RT 1: 93-6959 bp Neighborhood of RT #1 [93, 7168] DDE_Tnp_1 MFS_MefA_like RVT-GII GIIM DUF4352 DUF5105 DUF3994 Feature: gene Location: 93-455 bp Feature: domain Description: DDE_Tnp_1 Location: 189-444 bp Feature: domain Description: DDE_Tnp_1 Location: 1 89-444 bp Feature: gene Location: 993-2366 bp Feature: domain Description: MFS_MefA_like Location: 1155-2295 bp Feature: domain Description: MFS_MefA_like Location: 1 1 55-2295 bp Feature: gene Location: 3539-4456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3743-3902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3743-3902 bp Feature: domain Description: GIIM Note: maturase Location: 4154-4370 bp Feature: domain Description: GIIM Note: maturase Location: 41 54-4370 bp Feature: gene Location: 4918-5973 bp Feature: domain Description: DUF4352 Location: 5032-5353 bp Feature: domain Description: DUF4352 Location: 5032-5353 bp Feature: domain Description: DUF5105 Location: 5419-5968 bp Feature: domain Description: DUF51 05 Location: 541 9-5968 bp Feature: gene Location: 6206-7168 bp Feature: domain Description: DUF3994 Location: 6650-6959 bp Feature: domain Description: DUF3994 Location: 6650-6959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4352 (pfam11611), DUF5105 (pfam17118), DUF3994 (pfam13159), DDE_Tnp_1 (pfam01609), MFS_MefA_like (cd06173)

Seq: NUFH01000038.1 Bacillus pseudomycoides strain AFS000230 AFS000230_120_H12_Contig29_140618, whole genome shotgun sequence (7138 bp)
Overview 1 RT 1: 1495-6379 bp Neighborhood of RT #1 [1495, 6720] COG5263 FN3 DUF3238 RVT_N RVT-GII GIIM Feature: gene Location: 1495-2223 bp Feature: gene Location: 2369-4309 bp Feature: domain Description: COG5263 Location: 2501-2801 bp Feature: domain Description: COG52 63 Location: 2 501-2 801 bp Feature: domain Description: FN3 Location: 2915-3131 bp Feature: domain Description: FN3 Location: 2 915-3131 bp Feature: domain Description: DUF3238 Location: 3725-4175 bp Feature: domain Description: DUF32 38 Location: 372 5-4175 bp Feature: gene Location: 5035-6720 bp Feature: RT Description: RVT_N Location: 5119-5365 bp Feature: RT Description: RVT_N Location: 5119-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5419-6079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5419-6079 bp Feature: domain Description: GIIM Note: maturase Location: 6145-6379 bp Feature: domain Description: GIIM Note: maturase Location: 6145-6379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5263 (Glucan-binding domain (YG repeat) ), FN3 (smart00060), DUF3238 (pfam11579), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NUFH01000022.1 Bacillus pseudomycoides strain AFS000230 AFS000230_120_H12_Contig33_140618, whole genome shotgun sequence (46112 bp)
Overview 1 RT 1: 9402-13616 bp 2 RT 2: 23997-29645 bp Neighborhood of RT #1 [9402, 13723] Rve PRK03103 RVT-GII Intron_maturas2 HNHc PolY_Pol_V_umuC T4SS-DNA_transf Neighborhood of RT #2 [23997, 29645] DUF1738 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 9402-10082 bp Feature: domain Description: Rve Location: 9426-10041 bp Feature: domain Description: Rve Location: 9426-10041 bp Feature: gene Location: 10145-10405 bp Feature: domain Description: PRK03103 Location: 10160-10394 bp Feature: domain Description: PRK03 103 Location: 10160-103 94 bp Feature: gene Location: 10668-12479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10932-11763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093 2-11763 bp Feature: domain Description: Intron_maturas2 Location: 11844-12177 bp Feature: domain Description: Intron_maturas2 Location: 11844-12177 bp Feature: domain Description: HNHc Note: nucleases Location: 12273-12450 bp Feature: domain Description: HNHc Note: nucleases Location: 12273 -12450 bp Feature: gene Location: 13146-13400 bp Feature: domain Description: PolY_Pol_V_umuC Location: 13149-13395 bp Feature: domain Description: PolY_Pol_V_umuC Location: 13 149-13 3 95 bp Feature: gene Location: 13412-13723 bp Feature: domain Description: T4SS-DNA_transf Location: 13439-13616 bp Feature: domain Description: T4SS-DNA_transf Location: 13 43 9-13 616 bp Feature: gene Location: 23997-24278 bp Feature: gene Location: 24340-24717 bp Feature: domain Description: DUF1738 Location: 24484-24637 bp Feature: domain Description: DUF173 8 Location: 24484-2463 7 bp Feature: gene Location: 25429-27282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25693-26533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25693 -2653 3 bp Feature: domain Description: Intron_maturas2 Location: 26623-26971 bp Feature: domain Description: Intron_maturas2 Location: 26623 -26971 bp Feature: domain Description: HNHc Note: nucleases Location: 27064-27229 bp Feature: domain Description: HNHc Note: nucleases Location: 27064-27229 bp Feature: gene Location: 27308-28579 bp Feature: gene Location: 28641-29645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PolY_Pol_V_umuC (cd01700), T4SS-DNA_transf (pfam02534), Rve (COG3316), DUF1738 (pfam08401)

Seq: NUFH01000043.1 Bacillus pseudomycoides strain AFS000230 AFS000230_120_H12_Contig47_140618, whole genome shotgun sequence (54959 bp)
Overview 1 RT 1: 20209-25450 bp Neighborhood of RT #1 [20209, 25482] Rve PDDEXK_2 RVT_N RVT-GII GIIM HNHc PDDEXK_2 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 20209-20463 bp Feature: domain Description: Rve Location: 20218-20461 bp Feature: domain Description: Rve Location: 20218-204 61 bp Feature: gene Location: 20836-21105 bp Feature: domain Description: PDDEXK_2 Location: 20863-21094 bp Feature: domain Description: PDDEXK_2 Location: 20863-21094 bp Feature: gene Location: 21680-23476 bp Feature: RT Description: RVT_N Location: 21728-21971 bp Feature: RT Description: RVT_N Location: 21728-21971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22028-22697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22028-22697 bp Feature: domain Description: GIIM Note: maturase Location: 22757-22991 bp Feature: domain Description: GIIM Note: maturase Location: 22757-22991 bp Feature: domain Description: HNHc Note: nucleases Location: 23192-23357 bp Feature: domain Description: HNHc Note: nucleases Location: 23192-23357 bp Feature: gene Location: 23466-23828 bp Feature: domain Description: PDDEXK_2 Location: 23586-23811 bp Feature: domain Description: PDDEXK_2 Location: 23586-23811 bp Feature: gene Location: 23911-25482 bp Feature: domain Description: zf-IS66 Location: 24283-24415 bp Feature: domain Description: zf-IS66 Location: 24 283-24 4 15 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24481-25306 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24 4 81-25306 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25327-25450 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25327-254 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)