myRT

myRT report for GCA_002556665.1_ASM255666v1

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Seq: NOXF01000010.1 [Clostridium] leptum DSM 753 10c, whole genome shotgun sequence (95028 bp)
Overview 1 RT 1: 5720-10557 bp Neighborhood of RT #1 [5720, 10557] RVT-DGRs Feature: gene Location: 5720-5863 bp Feature: gene Location: 5877-6221 bp Feature: gene Location: 6169-7329 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6379-6988 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6379-6988 bp Feature: gene Location: 7681-9528 bp Feature: gene Location: 9550-10557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: NOXF01000011.1 [Clostridium] leptum DSM 753 11c, whole genome shotgun sequence (84104 bp)
Overview 1 RT 1: 27311-32972 bp Neighborhood of RT #1 [27311, 33142] RVT-GII HNHc TraC-F-type Feature: gene Location: 27311-28033 bp Feature: gene Location: 28261-28950 bp Feature: gene Location: 29627-31537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29963-30701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9963-30701 bp Feature: domain Description: HNHc Note: nucleases Location: 31313-31418 bp Feature: domain Description: HNHc Note: nucleases Location: 31313-31418 bp Feature: gene Location: 31552-31728 bp Feature: gene Location: 31637-33142 bp Feature: domain Description: TraC-F-type Location: 31688-32972 bp Feature: domain Description: TraC-F-type Location: 31688-32 972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746)

Seq: NOXF01000002.1 [Clostridium] leptum DSM 753 2c, whole genome shotgun sequence (322762 bp)
Overview 1 RT 1: 196892-201406 bp Neighborhood of RT #1 [196892, 201492] TnpV RVT-Retrons RVT-Retrons SIR2 RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like Feature: gene Location: 196892-197191 bp Feature: gene Location: 197344-197718 bp Feature: domain Description: TnpV Location: 197380-197710 bp Feature: domain Description: TnpV Location: 1973 80-197710 bp Feature: gene Location: 197767-199152 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 197797-198196 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 197797-198196 bp Feature: gene Location: 199109-199270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 199115-199262 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 199115-199262 bp Feature: gene Location: 199273-200118 bp Feature: domain Description: SIR2 Location: 199336-199936 bp Feature: domain Description: SIR2 Location: 1993 3 6-19993 6 bp Feature: gene Location: 200158-201492 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 200434-200770 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 20043 4-200770 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 200857-201406 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 200857-201406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), RVT-Retrons, SIR2 (pfam02146), RMtype1_S_SonII-TRD2-CR2_like (cd17246)

Seq: NOXF01000036.1 [Clostridium] leptum DSM 753 36c, whole genome shotgun sequence (2500 bp)
Overview 1 RT 1: 579-2355 bp Neighborhood of RT #1 [579, 2381] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 579-2381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 6-1638 bp Feature: domain Description: Intron_maturas2 Location: 1764-2016 bp Feature: domain Description: Intron_maturas2 Location: 1764 -2016 bp Feature: domain Description: HNHc Note: nucleases Location: 2184-2355 bp Feature: domain Description: HNHc Note: nucleases Location: 2184 -2355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)