myRT

myRT report for GCA_002557065.1_ASM255706v1

Download annotations/find similar RTs

Seq: NUAY01000207.1 Bacillus pseudomycoides strain AFS026185 AFS026185_61_F10_Contig207_140312, whole genome shotgun sequence (9521 bp)
Overview 1 RT 1: 538-6638 bp Neighborhood of RT #1 [538, 6658] DUF3994 DUF4352 DUF5105 RVT-GII DDE_Tnp_1 MFS_YfcJ_like Feature: gene Location: 538-1500 bp Feature: domain Description: DUF3994 Location: 982-1291 bp Feature: domain Description: DUF3994 Location: 982-1 291 bp Feature: gene Location: 1732-2787 bp Feature: domain Description: DUF4352 Location: 1846-2167 bp Feature: domain Description: DUF4352 Location: 1 846-21 67 bp Feature: domain Description: DUF5105 Location: 2233-2782 bp Feature: domain Description: DUF51 05 Location: 2233-2782 bp Feature: gene Location: 3250-3747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3454-3568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3454-3568 bp Feature: gene Location: 4000-5460 bp Feature: domain Description: DDE_Tnp_1 Location: 4357-5155 bp Feature: domain Description: DDE_Tnp_1 Location: 4357-51 55 bp Feature: gene Location: 5528-6658 bp Feature: domain Description: MFS_YfcJ_like Location: 5570-6638 bp Feature: domain Description: MFS_YfcJ_like Location: 5570-6638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, DDE_Tnp_1 (pfam01609), MFS_YfcJ_like (cd17489)

Seq: NUAY01000227.1 Bacillus pseudomycoides strain AFS026185 AFS026185_61_F10_Contig227_140312, whole genome shotgun sequence (4635 bp)
Overview 1 RT 1: 764-3663 bp Neighborhood of RT #1 [764, 4004] RVT_N RVT-GII GIIM Feature: gene Location: 764-1738 bp Feature: gene Location: 1755-2210 bp Feature: gene Location: 2355-4004 bp Feature: domain Description: RVT_N Location: 2403-2649 bp Feature: domain Description: RVT_N Location: 2 403-2 649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2703-3363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 703-3363 bp Feature: domain Description: GIIM Note: maturase Location: 3429-3663 bp Feature: domain Description: GIIM Note: maturase Location: 342 9-3663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NUAY01000047.1 Bacillus pseudomycoides strain AFS026185 AFS026185_61_F10_Contig47_140312, whole genome shotgun sequence (53370 bp)
Overview 1 RT 1: 12283-15378 bp Neighborhood of RT #1 [12283, 15467] RVT-UG2 ImmA Feature: gene Location: 12283-12762 bp Feature: gene Location: 12929-13072 bp Feature: gene Location: 13129-14538 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 13405-14242 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 13 405-14242 bp Feature: gene Location: 14628-14903 bp Feature: gene Location: 15045-15467 bp Feature: domain Description: ImmA Location: 15051-15378 bp Feature: domain Description: ImmA Location: 15051-153 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, ImmA (COG2856)

Seq: NUAY01000054.1 Bacillus pseudomycoides strain AFS026185 AFS026185_61_F10_Contig54_140312, whole genome shotgun sequence (5144 bp)
Overview 1 RT 1: 388-4986 bp Neighborhood of RT #1 [388, 4986] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 388-1305 bp Feature: gene Location: 1367-2638 bp Feature: gene Location: 2664-4517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2934-3768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2934 -3768 bp Feature: domain Description: Intron_maturas2 Location: 3858-4206 bp Feature: domain Description: Intron_maturas2 Location: 3858-4 206 bp Feature: domain Description: HNHc Note: nucleases Location: 4299-4464 bp Feature: domain Description: HNHc Note: nucleases Location: 4 299-4 4 64 bp Feature: gene Location: 4855-4986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NUAY01000085.1 Bacillus pseudomycoides strain AFS026185 AFS026185_61_F10_Contig85_140312, whole genome shotgun sequence (25002 bp)
Overview 1 RT 1: 10031-14327 bp Neighborhood of RT #1 [10031, 14398] T4SS-DNA_transf PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 Rve Feature: gene Location: 10031-10342 bp Feature: domain Description: T4SS-DNA_transf Location: 10058-10235 bp Feature: domain Description: T4SS-DNA_transf Location: 1005 8-10235 bp Feature: gene Location: 10354-10608 bp Feature: domain Description: PolY_Pol_V_umuC Location: 10357-10603 bp Feature: domain Description: PolY_Pol_V_umuC Location: 1035 7-10603 bp Feature: gene Location: 11275-13086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11539-12370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115 39-12370 bp Feature: domain Description: Intron_maturas2 Location: 12451-12784 bp Feature: domain Description: Intron_maturas2 Location: 1245 1-12784 bp Feature: domain Description: HNHc Note: nucleases Location: 12880-13057 bp Feature: domain Description: HNHc Note: nucleases Location: 12880-1305 7 bp Feature: gene Location: 13349-13609 bp Feature: domain Description: PRK03103 Location: 13364-13598 bp Feature: domain Description: PRK03103 Location: 13364-135 98 bp Feature: gene Location: 13742-14398 bp Feature: domain Description: Rve Location: 13748-14327 bp Feature: domain Description: Rve Location: 13748-14327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), PolY_Pol_V_umuC (cd01700), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK03103 (DNA polymerase IV; Reviewed), Rve (COG3316)