myRT

myRT report for GCA_002557385.1_ASM255738v1

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Seq: NUBP01000035.1 Bacillus pseudomycoides strain AFS022719 AFS022719_120_H7_Contig35_140618, whole genome shotgun sequence (6848 bp)
Overview 1 RT 1: 1205-6089 bp Neighborhood of RT #1 [1205, 6430] COG5263 FN3 DUF3238 RVT_N RVT-GII GIIM Feature: gene Location: 1205-1933 bp Feature: gene Location: 2079-4019 bp Feature: domain Description: COG5263 Location: 2211-2511 bp Feature: domain Description: COG5263 Location: 221 1 -251 1 bp Feature: domain Description: FN3 Location: 2625-2841 bp Feature: domain Description: FN3 Location: 2625-2841 bp Feature: domain Description: DUF3238 Location: 3435-3885 bp Feature: domain Description: DUF3238 Location: 3435-3885 bp Feature: gene Location: 4745-6430 bp Feature: RT Description: RVT_N Location: 4829-5075 bp Feature: RT Description: RVT_N Location: 4829-5075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5129-5789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 29-5789 bp Feature: domain Description: GIIM Note: maturase Location: 5855-6089 bp Feature: domain Description: GIIM Note: maturase Location: 5855-6089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5263 (Glucan-binding domain (YG repeat) ), FN3 (smart00060), DUF3238 (pfam11579), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NUBP01000036.1 Bacillus pseudomycoides strain AFS022719 AFS022719_120_H7_Contig36_140618, whole genome shotgun sequence (46270 bp)
Overview 1 RT 1: 9402-13713 bp 2 RT 2: 24094-29742 bp Neighborhood of RT #1 [9402, 13820] Rve PRK03103 RVT-GII Intron_maturas2 HNHc PolY_Pol_V_umuC T4SS-DNA_transf Neighborhood of RT #2 [24094, 29742] DUF1738 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 9402-10109 bp Feature: domain Description: Rve Location: 9426-10038 bp Feature: domain Description: Rve Location: 942 6-10038 bp Feature: gene Location: 10242-10502 bp Feature: domain Description: PRK03103 Location: 10257-10491 bp Feature: domain Description: PRK03103 Location: 102 57-10491 bp Feature: gene Location: 10765-12576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11029-11860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1102 9-11860 bp Feature: domain Description: Intron_maturas2 Location: 11941-12274 bp Feature: domain Description: Intron_maturas2 Location: 11941-12 2 74 bp Feature: domain Description: HNHc Note: nucleases Location: 12370-12547 bp Feature: domain Description: HNHc Note: nucleases Location: 12 370-12 547 bp Feature: gene Location: 13243-13497 bp Feature: domain Description: PolY_Pol_V_umuC Location: 13246-13492 bp Feature: domain Description: PolY_Pol_V_umuC Location: 132 46-13492 bp Feature: gene Location: 13509-13820 bp Feature: domain Description: T4SS-DNA_transf Location: 13536-13713 bp Feature: domain Description: T4SS-DNA_transf Location: 13536-13713 bp Feature: gene Location: 24094-24375 bp Feature: gene Location: 24437-24814 bp Feature: domain Description: DUF1738 Location: 24581-24734 bp Feature: domain Description: DUF1738 Location: 2 4581-2 4734 bp Feature: gene Location: 25526-27379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25790-26630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5790-2 6630 bp Feature: domain Description: Intron_maturas2 Location: 26720-27068 bp Feature: domain Description: Intron_maturas2 Location: 2 672 0-2 7068 bp Feature: domain Description: HNHc Note: nucleases Location: 27161-27326 bp Feature: domain Description: HNHc Note: nucleases Location: 2 7161-2 732 6 bp Feature: gene Location: 27405-28676 bp Feature: gene Location: 28738-29742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PolY_Pol_V_umuC (cd01700), T4SS-DNA_transf (pfam02534), Rve (COG3316), DUF1738 (pfam08401)

Seq: NUBP01000064.1 Bacillus pseudomycoides strain AFS022719 AFS022719_120_H7_Contig64_140618, whole genome shotgun sequence (54875 bp)
Overview 1 RT 1: 29469-34749 bp Neighborhood of RT #1 [29469, 34751] zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C PDDEXK_2 RVT_N RVT-GII GIIM HNHc PDDEXK_2 Rve Feature: gene Location: 29469-31049 bp Feature: domain Description: zf-IS66 Location: 29850-29982 bp Feature: domain Description: zf-IS66 Location: 29850-29982 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30048-30873 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 0048-3 0873 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 30894-31017 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 0894-3 1017 bp Feature: gene Location: 31132-31494 bp Feature: domain Description: PDDEXK_2 Location: 31252-31477 bp Feature: domain Description: PDDEXK_2 Location: 3 1252-3 1477 bp Feature: gene Location: 31484-33280 bp Feature: RT Description: RVT_N Location: 31532-31775 bp Feature: RT Description: RVT_N Location: 3 153 2-3 1775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31832-32501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 183 2-3 2501 bp Feature: domain Description: GIIM Note: maturase Location: 32561-32795 bp Feature: domain Description: GIIM Note: maturase Location: 3 2561-3 2795 bp Feature: domain Description: HNHc Note: nucleases Location: 32996-33161 bp Feature: domain Description: HNHc Note: nucleases Location: 3 2996-3 3 161 bp Feature: gene Location: 33855-34124 bp Feature: domain Description: PDDEXK_2 Location: 33882-34113 bp Feature: domain Description: PDDEXK_2 Location: 3 3 882-3 4113 bp Feature: gene Location: 34497-34751 bp Feature: domain Description: Rve Location: 34506-34749 bp Feature: domain Description: Rve Location: 3 4506-3 4749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Rve (COG3316)

Seq: NUBP01000073.1 Bacillus pseudomycoides strain AFS022719 AFS022719_120_H7_Contig73_140618, whole genome shotgun sequence (30646 bp)
Overview 1 RT 1: 24034-30138 bp Neighborhood of RT #1 [24034, 30209] DUF3994 DUF4352 DUF5105 RVT-GII GIIM MFS_MefA_like Feature: gene Location: 24034-24996 bp Feature: domain Description: DUF3994 Location: 24478-24787 bp Feature: domain Description: DUF3994 Location: 24 4 78-24 787 bp Feature: gene Location: 25229-26284 bp Feature: domain Description: DUF4352 Location: 25343-25664 bp Feature: domain Description: DUF4 352 Location: 2534 3-25664 bp Feature: domain Description: DUF5105 Location: 25730-26279 bp Feature: domain Description: DUF5105 Location: 25730-26279 bp Feature: gene Location: 26746-27663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26950-27109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26950-27109 bp Feature: domain Description: GIIM Note: maturase Location: 27361-27577 bp Feature: domain Description: GIIM Note: maturase Location: 27361-27577 bp Feature: gene Location: 28836-30209 bp Feature: domain Description: MFS_MefA_like Location: 28998-30138 bp Feature: domain Description: MFS_MefA_like Location: 28998-30138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173)