myRT

myRT report for GCA_002557465.1_ASM255746v1

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Seq: NUBQ01000024.1 Bacillus pseudomycoides strain AFS022598 AFS022598_96_A10_Contig27_140514, whole genome shotgun sequence (181830 bp)
Overview 1 RT 1: 175218-181322 bp Neighborhood of RT #1 [175218, 181393] DUF3994 DUF4352 DUF5105 RVT-GII GIIM MFS_MefA_like Feature: gene Location: 175218-176180 bp Feature: domain Description: DUF3994 Location: 175662-175971 bp Feature: domain Description: DUF3994 Location: 1 75662-1 75971 bp Feature: gene Location: 176413-177468 bp Feature: domain Description: DUF4352 Location: 176527-176848 bp Feature: domain Description: DUF4352 Location: 1 76527-1 76848 bp Feature: domain Description: DUF5105 Location: 176914-177463 bp Feature: domain Description: DUF51 05 Location: 1 7691 4-1 77463 bp Feature: gene Location: 177930-178847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178134-178293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 781 34-1 78293 bp Feature: domain Description: GIIM Note: maturase Location: 178545-178761 bp Feature: domain Description: GIIM Note: maturase Location: 1 78545-1 78761 bp Feature: gene Location: 180020-181393 bp Feature: domain Description: MFS_MefA_like Location: 180182-181322 bp Feature: domain Description: MFS_MefA_like Location: 1 801 82-1 81 322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3994 (pfam13159), DUF4352 (pfam11611), DUF5105 (pfam17118), RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173)

Seq: NUBQ01000043.1 Bacillus pseudomycoides strain AFS022598 AFS022598_96_A10_Contig43_140514, whole genome shotgun sequence (54863 bp)
Overview 1 RT 1: 29469-34749 bp Neighborhood of RT #1 [29469, 34751] zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C PDDEXK_2 RVT_N RVT-GII GIIM HNHc PDDEXK_2 Rve Feature: gene Location: 29469-31049 bp Feature: domain Description: zf-IS66 Location: 29850-29982 bp Feature: domain Description: zf-IS66 Location: 2 9850-2 9982 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30048-30873 bp Feature: domain Description: DDE_Tnp_IS66 Location: 30048-30873 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 30894-31017 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 30894-31017 bp Feature: gene Location: 31132-31494 bp Feature: domain Description: PDDEXK_2 Location: 31252-31477 bp Feature: domain Description: PDDEXK_2 Location: 312 52 -31477 bp Feature: gene Location: 31484-33280 bp Feature: RT Description: RVT_N Location: 31532-31775 bp Feature: RT Description: RVT_N Location: 31532 -31775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31832-32501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31832 -32 501 bp Feature: domain Description: GIIM Note: maturase Location: 32561-32795 bp Feature: domain Description: GIIM Note: maturase Location: 32 561-32 795 bp Feature: domain Description: HNHc Note: nucleases Location: 32996-33161 bp Feature: domain Description: HNHc Note: nucleases Location: 32 996-33161 bp Feature: gene Location: 33855-34124 bp Feature: domain Description: PDDEXK_2 Location: 33882-34113 bp Feature: domain Description: PDDEXK_2 Location: 33882 -34113 bp Feature: gene Location: 34497-34751 bp Feature: domain Description: Rve Location: 34506-34749 bp Feature: domain Description: Rve Location: 34506-34749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Rve (COG3316)

Seq: NUBQ01000130.1 Bacillus pseudomycoides strain AFS022598 AFS022598_96_A10_Contig58_140514, whole genome shotgun sequence (36095 bp)
Overview 1 RT 1: 16468-22116 bp 2 RT 2: 32390-35957 bp Neighborhood of RT #1 [16468, 22116] RVT-GII Intron_maturas2 HNHc DUF1738 Neighborhood of RT #2 [32390, 35968] T4SS-DNA_transf PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 Feature: gene Location: 16468-17472 bp Feature: gene Location: 17534-18805 bp Feature: gene Location: 18831-20684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19095-19935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19095-1993 5 bp Feature: domain Description: Intron_maturas2 Location: 20025-20373 bp Feature: domain Description: Intron_maturas2 Location: 20025-203 73 bp Feature: domain Description: HNHc Note: nucleases Location: 20466-20631 bp Feature: domain Description: HNHc Note: nucleases Location: 20466-2063 1 bp Feature: gene Location: 21396-21773 bp Feature: domain Description: DUF1738 Location: 21540-21693 bp Feature: domain Description: DUF173 8 Location: 21540-21693 bp Feature: gene Location: 21835-22116 bp Feature: gene Location: 32390-32701 bp Feature: domain Description: T4SS-DNA_transf Location: 32417-32594 bp Feature: domain Description: T4SS-DNA_transf Location: 3 2417-3 2594 bp Feature: gene Location: 32713-32967 bp Feature: domain Description: PolY_Pol_V_umuC Location: 32716-32962 bp Feature: domain Description: PolY_Pol_V_umuC Location: 3 2716-3 2962 bp Feature: gene Location: 33634-35445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33898-34729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 898-3 4729 bp Feature: domain Description: Intron_maturas2 Location: 34810-35143 bp Feature: domain Description: Intron_maturas2 Location: 3 4810-3 5143 bp Feature: domain Description: HNHc Note: nucleases Location: 35239-35416 bp Feature: domain Description: HNHc Note: nucleases Location: 3 523 9-3 5416 bp Feature: gene Location: 35708-35968 bp Feature: domain Description: PRK03103 Location: 35723-35957 bp Feature: domain Description: PRK03 103 Location: 3 5723 -3 5957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1738 (pfam08401), T4SS-DNA_transf (pfam02534), PolY_Pol_V_umuC (cd01700), PRK03103 (DNA polymerase IV; Reviewed)

Seq: NUBQ01000156.1 Bacillus pseudomycoides strain AFS022598 AFS022598_96_A10_Contig93_140514, whole genome shotgun sequence (8055 bp)
Overview 1 RT 1: 1-6569 bp Neighborhood of RT #1 [1, 6569] RVT_N RVT-GII GIIM COG5263 FN3 DUF3238 Feature: gene Location: 1-651 bp Feature: gene Location: 668-1123 bp Feature: gene Location: 1344-2993 bp Feature: RT Description: RVT_N Location: 1392-1638 bp Feature: RT Description: RVT_N Location: 1392-1638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692-2352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1692-2352 bp Feature: domain Description: GIIM Note: maturase Location: 2418-2652 bp Feature: domain Description: GIIM Note: maturase Location: 24 18-2652 bp Feature: gene Location: 3755-5695 bp Feature: domain Description: COG5263 Location: 3887-4187 bp Feature: domain Description: COG5263 Location: 3887-4 187 bp Feature: domain Description: FN3 Location: 4301-4517 bp Feature: domain Description: FN3 Location: 4 301-4 517 bp Feature: domain Description: DUF3238 Location: 5111-5561 bp Feature: domain Description: DUF3238 Location: 5111-5561 bp Feature: gene Location: 5841-6569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)