myRT

myRT report for GCA_002557835.1_ASM255783v1

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Seq: NUAE01000165.1 Bacillus pseudomycoides strain AFS028766 AFS028766_96_A1_Contig126_140514, whole genome shotgun sequence (18990 bp)
Overview 1 RT 1: 214-3346 bp 2 RT 2: 6728-10603 bp Neighborhood of RT #1 [214, 3346] RVT-GII Intron_maturas2 HNHc DUF1738 Neighborhood of RT #2 [6728, 10603] Spr RVT-GII Intron_maturas2 HNHc TraC-F-type Feature: gene Location: 214-2031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478-1309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478-1 309 bp Feature: domain Description: Intron_maturas2 Location: 1384-1678 bp Feature: domain Description: Intron_maturas2 Location: 1 384-1 678 bp Feature: domain Description: HNHc Note: nucleases Location: 1849-2002 bp Feature: domain Description: HNHc Note: nucleases Location: 1 849-2002 bp Feature: gene Location: 2623-3072 bp Feature: domain Description: DUF1738 Location: 2836-2989 bp Feature: domain Description: DUF1 738 Location: 2836-2989 bp Feature: gene Location: 3065-3346 bp Feature: gene Location: 6728-7327 bp Feature: gene Location: 7377-7844 bp Feature: domain Description: Spr Location: 7437-7827 bp Feature: domain Description: Spr Location: 7437-7827 bp Feature: gene Location: 7961-8773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7967-8048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7967-8048 bp Feature: domain Description: Intron_maturas2 Location: 8120-8417 bp Feature: domain Description: Intron_maturas2 Location: 81 20-841 7 bp Feature: domain Description: HNHc Note: nucleases Location: 8594-8747 bp Feature: domain Description: HNHc Note: nucleases Location: 8594-8747 bp Feature: gene Location: 8846-9835 bp Feature: domain Description: TraC-F-type Location: 8852-9785 bp Feature: domain Description: TraC-F-type Location: 8852-9785 bp Feature: gene Location: 9842-10603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1738 (pfam08401), Spr (COG0791), TraC-F-type (TIGR02746)

Seq: NUAE01000103.1 Bacillus pseudomycoides strain AFS028766 AFS028766_96_A1_Contig64_140514, whole genome shotgun sequence (17750 bp)
Overview 1 RT 1: 6930-13010 bp Neighborhood of RT #1 [6930, 13010] TraC-F-type TraC-F-type Lysozyme_like RVT-GII HNHc Lysozyme_like Spr Feature: gene Location: 6930-8870 bp Feature: domain Description: TraC-F-type Location: 7296-7884 bp Feature: domain Description: TraC-F-type Location: 72 96-7884 bp Feature: domain Description: TraC-F-type Location: 8238-8760 bp Feature: domain Description: TraC-F-type Location: 82 38-8760 bp Feature: gene Location: 8874-9374 bp Feature: domain Description: Lysozyme_like Location: 9060-9357 bp Feature: domain Description: Lysozyme_like Location: 9060-9357 bp Feature: gene Location: 10157-11926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10403-11108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10403-11108 bp Feature: domain Description: HNHc Note: nucleases Location: 11669-11804 bp Feature: domain Description: HNHc Note: nucleases Location: 11669-11804 bp Feature: gene Location: 11939-12673 bp Feature: domain Description: Lysozyme_like Location: 12038-12230 bp Feature: domain Description: Lysozyme_like Location: 12 038-12 2 30 bp Feature: domain Description: Spr Location: 12266-12656 bp Feature: domain Description: Spr Location: 12 2 66-12 656 bp Feature: gene Location: 12708-13010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Lysozyme_like (pfam13702), Spr (COG0791), TraC-F-type (TIGR02746)

Seq: NUAE01000118.1 Bacillus pseudomycoides strain AFS028766 AFS028766_96_A1_Contig79_140514, whole genome shotgun sequence (23850 bp)
Overview 1 RT 1: 9239-15829 bp Neighborhood of RT #1 [9239, 15852] AcrR PRK06752 RVT-GII GIIM HNHc BaxI_1 Uup ABC_tran_CTD Feature: gene Location: 9239-9613 bp Feature: domain Description: AcrR Location: 9263-9536 bp Feature: domain Description: AcrR Location: 9263 -953 6 bp Feature: gene Location: 9813-9971 bp Feature: domain Description: PRK06752 Location: 9819-9966 bp Feature: domain Description: PRK06752 Location: 9819-9966 bp Feature: gene Location: 10336-12198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10630-11335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1063 0-113 3 5 bp Feature: domain Description: GIIM Note: maturase Location: 11434-11641 bp Feature: domain Description: GIIM Note: maturase Location: 1143 4-11641 bp Feature: domain Description: HNHc Note: nucleases Location: 11944-12118 bp Feature: domain Description: HNHc Note: nucleases Location: 11944-12118 bp Feature: gene Location: 13153-13884 bp Feature: domain Description: BaxI_1 Location: 13168-13873 bp Feature: domain Description: BaxI_1 Location: 13 168-13 873 bp Feature: gene Location: 13960-15852 bp Feature: domain Description: Uup Location: 13963-15553 bp Feature: domain Description: Uup Location: 13 963 -15553 bp Feature: domain Description: ABC_tran_CTD Location: 15634-15829 bp Feature: domain Description: ABC_tran_CTD Location: 1563 4-15829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), BaxI_1 (pfam12811), Uup (COG0488), ABC_tran_CTD (pfam16326), AcrR (COG1309), PRK06752 (single-stranded DNA-binding protein; Validated)

Seq: NUAE01000132.1 Bacillus pseudomycoides strain AFS028766 AFS028766_96_A1_Contig93_140514, whole genome shotgun sequence (30129 bp)
Overview 1 RT 1: 2-5503 bp Neighborhood of RT #1 [2, 5712] DDE_Tnp_1 RVT-GII GIIM DUF4352 DUF5105 DUF3994 Feature: gene Location: 2-1471 bp Feature: domain Description: DDE_Tnp_1 Location: 398-1196 bp Feature: domain Description: DDE_Tnp_1 Location: 398-1196 bp Feature: gene Location: 1501-1788 bp Feature: gene Location: 2082-2999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2286-2445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2286-24 4 5 bp Feature: domain Description: GIIM Note: maturase Location: 2697-2913 bp Feature: domain Description: GIIM Note: maturase Location: 2697-2913 bp Feature: gene Location: 3463-4518 bp Feature: domain Description: DUF4352 Location: 3577-3898 bp Feature: domain Description: DUF4 352 Location: 3577-3898 bp Feature: domain Description: DUF5105 Location: 3964-4513 bp Feature: domain Description: DUF5105 Location: 3964 -4 513 bp Feature: gene Location: 4750-5712 bp Feature: domain Description: DUF3994 Location: 5194-5503 bp Feature: domain Description: DUF3994 Location: 5194 -5503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), DUF4352 (pfam11611), DUF5105 (pfam17118), DUF3994 (pfam13159)

Seq: NUAE01000134.1 Bacillus pseudomycoides strain AFS028766 AFS028766_96_A1_Contig95_140514, whole genome shotgun sequence (2303 bp)
Overview 1 RT 1: 105-2300 bp Neighborhood of RT #1 [105, 2300] RVT_N RVT-GII GIIM Feature: gene Location: 105-1754 bp Feature: RT Description: RVT_N Location: 153-399 bp Feature: RT Description: RVT_N Location: 15 3-399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453-1113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 3-1113 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1413 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1413 bp Feature: gene Location: 2130-2300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)