myRT

myRT report for GCA_002561015.1_ASM256101v1

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Seq: NTTN01000023.1 Bacillus megaterium strain AFS018399 AFS018399_69_H9_Contig23_140404, whole genome shotgun sequence (97279 bp)
Overview 1 RT 1: 11675-24012 bp 2 RT 2: 27726-32761 bp 3 RT 3: 77958-82863 bp Neighborhood of RT #1 [11675, 24012] RVT-GII HNHc VirB4 TraC-F-type TraC-F-type Lysozyme_like RVT-GII Intron_maturas2 HNHc Spr Neighborhood of RT #2 [27726, 32761] DUF1738 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [77958, 82880] MFS_LmrB_MDR_like RVT_N RVT-GII GIIM DUF2178 XRE Feature: gene Location: 11675-12769 bp Feature: gene Location: 13447-13665 bp Feature: gene Location: 13718-15292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13799-14492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3799-1 4492 bp Feature: domain Description: HNHc Note: nucleases Location: 15068-15170 bp Feature: domain Description: HNHc Note: nucleases Location: 1 5068-1 51 70 bp Feature: gene Location: 15366-16415 bp Feature: gene Location: 16460-16771 bp Feature: gene Location: 17848-19782 bp Feature: domain Description: VirB4 Location: 17962-18346 bp Feature: domain Description: VirB4 Location: 1 7962-1 8346 bp Feature: domain Description: TraC-F-type Location: 18559-18913 bp Feature: domain Description: TraC-F-type Location: 1 8559-1 891 3 bp Feature: domain Description: TraC-F-type Location: 19360-19681 bp Feature: domain Description: TraC-F-type Location: 1 9360-1 9681 bp Feature: gene Location: 19786-20421 bp Feature: domain Description: Lysozyme_like Location: 19981-20410 bp Feature: domain Description: Lysozyme_like Location: 1 9981 -2041 0 bp Feature: gene Location: 20994-22817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21258-22092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 258-22092 bp Feature: domain Description: Intron_maturas2 Location: 22164-22464 bp Feature: domain Description: Intron_maturas2 Location: 221 64-22464 bp Feature: domain Description: HNHc Note: nucleases Location: 22638-22794 bp Feature: domain Description: HNHc Note: nucleases Location: 22638-22794 bp Feature: gene Location: 23033-23416 bp Feature: domain Description: Spr Location: 23036-23399 bp Feature: domain Description: Spr Location: 23036-23399 bp Feature: gene Location: 23431-24012 bp Feature: gene Location: 27726-28217 bp Feature: domain Description: DUF1738 Location: 27936-28083 bp Feature: domain Description: DUF1 738 Location: 27936-28083 bp Feature: gene Location: 28256-28426 bp Feature: gene Location: 29042-30895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29306-30143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29306-301 43 bp Feature: domain Description: Intron_maturas2 Location: 30239-30578 bp Feature: domain Description: Intron_maturas2 Location: 30239-30578 bp Feature: domain Description: HNHc Note: nucleases Location: 30686-30842 bp Feature: domain Description: HNHc Note: nucleases Location: 30686-30842 bp Feature: gene Location: 30921-31670 bp Feature: gene Location: 31715-32761 bp Feature: gene Location: 77958-79445 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 78069-79416 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 78069-7941 6 bp Feature: gene Location: 79676-79891 bp Feature: gene Location: 80051-81700 bp Feature: RT Description: RVT_N Location: 80099-80345 bp Feature: RT Description: RVT_N Location: 80099-80345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80399-81059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80399-81 059 bp Feature: domain Description: GIIM Note: maturase Location: 81125-81359 bp Feature: domain Description: GIIM Note: maturase Location: 81 1 25-81 359 bp Feature: gene Location: 82376-82654 bp Feature: domain Description: DUF2178 Location: 82400-82610 bp Feature: domain Description: DUF21 78 Location: 82400-8261 0 bp Feature: gene Location: 82656-82880 bp Feature: domain Description: XRE Location: 82680-82863 bp Feature: domain Description: XRE Location: 82680-82863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), VirB4 (COG3451), TraC-F-type (TIGR02746), Lysozyme_like (pfam13702), Intron_maturas2 (pfam01348), Spr (COG0791), DUF1738 (pfam08401), MFS_LmrB_MDR_like (cd17503), RVT_N (pfam13655)
GIIM (pfam08388), DUF2178 (pfam09946), XRE (COG1476)

Seq: NTTN01000005.1 Bacillus megaterium strain AFS018399 AFS018399_69_H9_Contig5_140404, whole genome shotgun sequence (31669 bp)
Overview 1 RT 1: 567-3735 bp Neighborhood of RT #1 [567, 3764] RVT_N RVT-GII GIIM Tas Feature: gene Location: 567-2252 bp Feature: RT Description: RVT_N Location: 651-897 bp Feature: RT Description: RVT_N Location: 651-897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1611 bp Feature: domain Description: GIIM Note: maturase Location: 1677-1911 bp Feature: domain Description: GIIM Note: maturase Location: 1677-1911 bp Feature: gene Location: 2379-2549 bp Feature: gene Location: 2751-3764 bp Feature: domain Description: Tas Location: 2787-3735 bp Feature: domain Description: Tas Location: 2 787-3735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tas (COG0667), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)