myRT

myRT report for GCA_002561045.1_ASM256104v1

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Seq: NTTR01000017.1 Bacillus thuringiensis strain AFS018179 AFS018179_71_E5_Contig17_140411, whole genome shotgun sequence (87544 bp)
Overview 1 RT 1: 38812-45662 bp Neighborhood of RT #1 [38812, 45662] RVT_N RVT-GII GIIM HNHc DEXDc Feature: gene Location: 38812-39525 bp Feature: gene Location: 39542-40249 bp Feature: gene Location: 40366-42174 bp Feature: domain Description: RVT_N Location: 40417-40657 bp Feature: domain Description: RVT_N Location: 4041 7-40657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40717-41371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4071 7-41 371 bp Feature: domain Description: GIIM Note: maturase Location: 41434-41668 bp Feature: domain Description: GIIM Note: maturase Location: 41 434-41 668 bp Feature: domain Description: HNHc Note: nucleases Location: 41881-42028 bp Feature: domain Description: HNHc Note: nucleases Location: 41 881 -42028 bp Feature: gene Location: 42778-45411 bp Feature: domain Description: DEXDc Location: 43606-44557 bp Feature: domain Description: DEXDc Location: 43606-44557 bp Feature: gene Location: 45435-45662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXDc (smart00487)

Seq: NTTR01000044.1 Bacillus thuringiensis strain AFS018179 AFS018179_71_E5_Contig44_140411, whole genome shotgun sequence (60221 bp)
Overview 1 RT 1: 48246-51478 bp Neighborhood of RT #1 [48246, 51498] DDE_Tnp_1 RVT-GII PRK06760 Feature: gene Location: 48246-48461 bp Feature: domain Description: DDE_Tnp_1 Location: 48270-48453 bp Feature: domain Description: DDE_Tnp_1 Location: 482 70-48453 bp Feature: gene Location: 48520-48777 bp Feature: gene Location: 49281-49703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49284-49629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492 84-4962 9 bp Feature: gene Location: 50616-50780 bp Feature: gene Location: 50797-51498 bp Feature: domain Description: PRK06760 Location: 50800-51478 bp Feature: domain Description: PRK06760 Location: 50800-51478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, PRK06760 (hypothetical protein; Provisional)

Seq: NTTR01000084.1 Bacillus thuringiensis strain AFS018179 AFS018179_71_E5_Contig84_140411, whole genome shotgun sequence (2493 bp)
Overview 1 RT 1: 49-1837 bp Neighborhood of RT #1 [49, 1866] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 49-1866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 19-1141 bp Feature: domain Description: Intron_maturas2 Location: 1222-1516 bp Feature: domain Description: Intron_maturas2 Location: 1222-1516 bp Feature: domain Description: HNHc Note: nucleases Location: 1663-1837 bp Feature: domain Description: HNHc Note: nucleases Location: 1663 -183 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NTTR01000009.1 Bacillus thuringiensis strain AFS018179 AFS018179_71_E5_Contig9_140411, whole genome shotgun sequence (545775 bp)
Overview 1 RT 1: 324772-330857 bp Neighborhood of RT #1 [324772, 330862] PRK13922 PRK13927 RVT-GII HNHc PRK00024 PRK00148 Feature: gene Location: 324772-325623 bp Feature: domain Description: PRK13922 Location: 324775-325603 bp Feature: domain Description: PRK13922 Location: 324 775-325603 bp Feature: gene Location: 325665-326684 bp Feature: domain Description: PRK13927 Location: 325683-326673 bp Feature: domain Description: PRK13927 Location: 325683-326673 bp Feature: gene Location: 327006-328877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327327-328035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327327-328035 bp Feature: domain Description: HNHc Note: nucleases Location: 328629-328797 bp Feature: domain Description: HNHc Note: nucleases Location: 328629-328797 bp Feature: gene Location: 329578-330219 bp Feature: domain Description: PRK00024 Location: 329590-330205 bp Feature: domain Description: PRK00024 Location: 329590-330205 bp Feature: gene Location: 330266-330862 bp Feature: domain Description: PRK00148 Location: 330296-330857 bp Feature: domain Description: PRK0014 8 Location: 330296-330857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT-GII, HNHc (smart00507), PRK00024 (DNA repair protein RadC), PRK00148 (Maf-like protein; Reviewed)