myRT

myRT report for GCA_002563885.1_ASM256388v1

Download annotations/find similar RTs

Seq: PDJA01000001.1 Marinobacter sp. LV10MA510-1 Ga0070630_11, whole genome shotgun sequence (4447234 bp)
Overview 1 RT 1: 170261-173392 bp 2 RT 2: 4014523-4020282 bp Neighborhood of RT #1 [170261, 173392] BLUF RVT-GII Neighborhood of RT #2 [4014523, 4020383] COG3666 DDE_Tnp_1_6 RVT-Retrons HTH_Tnp_1 HTH_Tnp_1 Feature: gene Location: 170261-170719 bp Feature: gene Location: 170779-171030 bp Feature: domain Description: BLUF Location: 170788-170884 bp Feature: domain Description: BLUF Location: 1 70788-1 70884 bp Feature: gene Location: 170989-171645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171088-171265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 088-1 71 265 bp Feature: gene Location: 171791-171949 bp Feature: gene Location: 172247-173392 bp Feature: gene Location: 4014523-4015095 bp Feature: gene Location: 4015176-4016747 bp Feature: domain Description: COG3666 Location: 4015296-4015632 bp Feature: domain Description: COG3666 Location: 401 5296-401 5632 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4016322-4016721 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 401 6322-401 6721 bp Feature: gene Location: 4017759-4019153 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4017762-4018170 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401 7762-401 81 70 bp Feature: gene Location: 4019551-4019838 bp Feature: gene Location: 4019877-4020383 bp Feature: domain Description: HTH_Tnp_1 Location: 4019886-4020021 bp Feature: domain Description: HTH_Tnp_1 Location: 401 9886-4020021 bp Feature: domain Description: HTH_Tnp_1 Location: 4020060-4020282 bp Feature: domain Description: HTH_Tnp_1 Location: 4020060-4020282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BLUF (smart01034), RVT-GII, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, HTH_Tnp_1 (pfam01527)