myRT

myRT report for GCA_002564065.1_ASM256406v1

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Seq: PDBV01000001.1 Saccharopolyspora erythraea NRRL 2338 strain DSM 40517 Ga0074755_11, whole genome shotgun sequence (8230103 bp)
Overview 1 RT 1: 2885986-2889562 bp 2 RT 2: 6793107-6799472 bp Neighborhood of RT #1 [2885986, 2889562] DDE_Tnp_1 DUF4096 RVT-GII GIIM COG3293 COG3293 Neighborhood of RT #2 [6793107, 6799472] LysR DedA RVT-Retrons Peptidase_S13 Feature: gene Location: 2885986-2886249 bp Feature: domain Description: DDE_Tnp_1 Location: 2885992-2886247 bp Feature: domain Description: DDE_Tnp_1 Location: 2885992-2886247 bp Feature: gene Location: 2886300-2886653 bp Feature: domain Description: DUF4096 Location: 2886336-2886555 bp Feature: domain Description: DUF4096 Location: 2886336-2886555 bp Feature: gene Location: 2886698-2887750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2886719-2887364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288671 9-2887364 bp Feature: domain Description: GIIM Note: maturase Location: 2887445-2887676 bp Feature: domain Description: GIIM Note: maturase Location: 2887445-2887676 bp Feature: gene Location: 2887914-2888738 bp Feature: domain Description: COG3293 Location: 2887938-2888208 bp Feature: domain Description: COG3293 Location: 2887938-2888208 bp Feature: domain Description: COG3293 Location: 2888322-2888649 bp Feature: domain Description: COG3293 Location: 2888322-2888649 bp Feature: gene Location: 2889011-2889562 bp Feature: gene Location: 6793107-6794507 bp Feature: domain Description: LysR Location: 6793632-6794502 bp Feature: domain Description: LysR Location: 6793632-6794502 bp Feature: gene Location: 6794593-6795267 bp Feature: domain Description: DedA Location: 6794653-6795205 bp Feature: domain Description: DedA Location: 6794653-6795205 bp Feature: gene Location: 6795475-6796995 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6796126-6796765 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67961 26-6796765 bp Feature: gene Location: 6797125-6798744 bp Feature: domain Description: Peptidase_S13 Location: 6797275-6798622 bp Feature: domain Description: Peptidase_S1 3 Location: 6797275-6798622 bp Feature: gene Location: 6799278-6799472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), DUF4096 (pfam13340), RVT-GII, GIIM (pfam08388), COG3293 (Transposase ), LysR (COG0583), DedA (COG0586), RVT-Retrons, Peptidase_S13 (pfam02113)