myRT

myRT report for GCA_002566715.1_ASM256671v1

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Seq: NUZF01000013.1 Bacillus thuringiensis strain AFS075082 AFS075082_110_C4_Contig13_140523, whole genome shotgun sequence (28051 bp)
Overview 1 RT 1: 1288-7033 bp Neighborhood of RT #1 [1288, 7887] RVT_N RVT-GII GIIM HNHc DEXDc Feature: gene Location: 1288-2001 bp Feature: gene Location: 2018-2725 bp Feature: gene Location: 2842-4650 bp Feature: domain Description: RVT_N Location: 2893-3133 bp Feature: domain Description: RVT_N Location: 2893-31 33 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3193-3847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 93-3847 bp Feature: domain Description: GIIM Note: maturase Location: 3910-4144 bp Feature: domain Description: GIIM Note: maturase Location: 391 0-41 44 bp Feature: domain Description: HNHc Note: nucleases Location: 4357-4504 bp Feature: domain Description: HNHc Note: nucleases Location: 4357-4504 bp Feature: gene Location: 4996-5226 bp Feature: gene Location: 5254-7887 bp Feature: domain Description: DEXDc Location: 6082-7033 bp Feature: domain Description: DEXDc Location: 6082-7033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXDc (smart00487)

Seq: NUZF01000003.1 Bacillus thuringiensis strain AFS075082 AFS075082_110_C4_Contig3_140523, whole genome shotgun sequence (4044 bp)
Overview 1 RT 1: 3-3751 bp Neighborhood of RT #1 [3, 3751] CwlT_like NlpD Spr RVT-GII HNHc Feature: gene Location: 3-239 bp Feature: gene Location: 256-1356 bp Feature: domain Description: CwlT_like Location: 283-469 bp Feature: domain Description: CwlT_like Location: 2 83-469 bp Feature: domain Description: NlpD Location: 496-928 bp Feature: domain Description: NlpD Location: 496-92 8 bp Feature: domain Description: Spr Location: 961-1297 bp Feature: domain Description: Spr Location: 961-12 97 bp Feature: gene Location: 1425-3221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1683-2388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1683-2 388 bp Feature: domain Description: HNHc Note: nucleases Location: 2949-3084 bp Feature: domain Description: HNHc Note: nucleases Location: 2 949-3084 bp Feature: gene Location: 3533-3751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlT_like, NlpD (COG0739), Spr (COG0791), RVT-GII, HNHc (smart00507)

Seq: NUZF01000004.1 Bacillus thuringiensis strain AFS075082 AFS075082_110_C4_Contig4_140523, whole genome shotgun sequence (141159 bp)
Overview 1 RT 1: 23384-29472 bp Neighborhood of RT #1 [23384, 29477] PRK13922 PRK13927 RVT-GII HNHc PRK00024 PRK00148 Feature: gene Location: 23384-24235 bp Feature: domain Description: PRK13922 Location: 23387-24215 bp Feature: domain Description: PRK13 922 Location: 23 3 87-24215 bp Feature: gene Location: 24277-25296 bp Feature: domain Description: PRK13927 Location: 24295-25285 bp Feature: domain Description: PRK13 927 Location: 24295-25285 bp Feature: gene Location: 25618-27492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25939-26650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2593 9-26650 bp Feature: domain Description: HNHc Note: nucleases Location: 27244-27412 bp Feature: domain Description: HNHc Note: nucleases Location: 27244-27412 bp Feature: gene Location: 28193-28834 bp Feature: domain Description: PRK00024 Location: 28205-28820 bp Feature: domain Description: PRK00024 Location: 28205-28820 bp Feature: gene Location: 28881-29477 bp Feature: domain Description: PRK00148 Location: 28911-29472 bp Feature: domain Description: PRK00148 Location: 28911-29472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT-GII, HNHc (smart00507), PRK00024 (DNA repair protein RadC), PRK00148 (Maf-like protein; Reviewed)

Seq: NUZF01000050.1 Bacillus thuringiensis strain AFS075082 AFS075082_110_C4_Contig50_140523, whole genome shotgun sequence (63046 bp)
Overview 1 RT 1: 8951-11967 bp Neighborhood of RT #1 [8951, 11975] PRK06760 RVT-GII DDE_Tnp_1 Feature: gene Location: 8951-9424 bp Feature: domain Description: PRK06760 Location: 8954-9404 bp Feature: domain Description: PRK06760 Location: 8954 -94 04 bp Feature: gene Location: 9441-9605 bp Feature: gene Location: 10518-10940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10521-10866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10521-10866 bp Feature: gene Location: 11444-11689 bp Feature: gene Location: 11760-11975 bp Feature: domain Description: DDE_Tnp_1 Location: 11784-11967 bp Feature: domain Description: DDE_Tnp_1 Location: 11784 -11967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06760 (hypothetical protein; Provisional), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: NUZF01000073.1 Bacillus thuringiensis strain AFS075082 AFS075082_110_C4_Contig73_140523, whole genome shotgun sequence (2493 bp)
Overview 1 RT 1: 49-1837 bp Neighborhood of RT #1 [49, 1866] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 49-1866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-1141 bp Feature: domain Description: Intron_maturas2 Location: 1222-1516 bp Feature: domain Description: Intron_maturas2 Location: 1222-15 16 bp Feature: domain Description: HNHc Note: nucleases Location: 1663-1837 bp Feature: domain Description: HNHc Note: nucleases Location: 1663-1837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NUZF01000088.1 Bacillus thuringiensis strain AFS075082 AFS075082_110_C4_Contig88_140523, whole genome shotgun sequence (12424 bp)
Overview 1 RT 1: 6425-12421 bp Neighborhood of RT #1 [6425, 12421] rpsA TraG-D_C Ftsk_gamma Ftsk_gamma RVT-GII GIIM HNHc Feature: gene Location: 6425-7408 bp Feature: domain Description: rpsA Location: 6692-7229 bp Feature: domain Description: rpsA Location: 6 6 92-7229 bp Feature: gene Location: 7643-9424 bp Feature: domain Description: TraG-D_C Location: 7655-7973 bp Feature: domain Description: TraG-D_C Location: 76 55-7973 bp Feature: domain Description: Ftsk_gamma Location: 8399-8579 bp Feature: domain Description: Ftsk_gamma Location: 8399-8579 bp Feature: domain Description: Ftsk_gamma Location: 8747-8888 bp Feature: domain Description: Ftsk_gamma Location: 8747-8888 bp Feature: gene Location: 9657-11531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9957-10662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9957-106 6 2 bp Feature: domain Description: GIIM Note: maturase Location: 10776-10944 bp Feature: domain Description: GIIM Note: maturase Location: 10776 -10944 bp Feature: domain Description: HNHc Note: nucleases Location: 11292-11457 bp Feature: domain Description: HNHc Note: nucleases Location: 11292-11457 bp Feature: gene Location: 12203-12421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT-GII, GIIM (pfam08388), HNHc (smart00507)