myRT

myRT report for GCA_002567005.1_ASM256700v1

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Seq: NUZU01000038.1 Bacillus sp. AFS073361 AFS073361_116_A10_Contig20_140618, whole genome shotgun sequence (144347 bp)
Overview 1 RT 1: 139869-144169 bp Neighborhood of RT #1 [139869, 144198] PRK13922 PRK13927 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 139869-140750 bp Feature: domain Description: PRK13922 Location: 139872-140697 bp Feature: domain Description: PRK1 3922 Location: 1 39872-1 40697 bp Feature: gene Location: 140836-141915 bp Feature: domain Description: PRK13927 Location: 140905-141898 bp Feature: domain Description: PRK1 3927 Location: 1 40905-1 41 898 bp Feature: gene Location: 142327-144198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142651-143482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 42651 -1 43482 bp Feature: domain Description: Intron_maturas2 Location: 143563-143911 bp Feature: domain Description: Intron_maturas2 Location: 1 43563-1 4391 1 bp Feature: domain Description: HNHc Note: nucleases Location: 144001-144169 bp Feature: domain Description: HNHc Note: nucleases Location: 1 44001 -1 441 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NUZU01000031.1 Bacillus sp. AFS073361 AFS073361_116_A10_Contig29_140618, whole genome shotgun sequence (190212 bp)
Overview 1 RT 1: 8272-11831 bp Neighborhood of RT #1 [8272, 11839] trehalos_R_Bsub SRAP RVT-GII GIIM SRAP Feature: gene Location: 8272-8985 bp Feature: domain Description: trehalos_R_Bsub Location: 8284-8977 bp Feature: domain Description: trehalos_R_Bsub Location: 82 84-8977 bp Feature: gene Location: 9110-9406 bp Feature: domain Description: SRAP Location: 9113-9395 bp Feature: domain Description: SRAP Location: 9113-9395 bp Feature: gene Location: 9469-10794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9736-10357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9736-10357 bp Feature: domain Description: GIIM Note: maturase Location: 10402-10636 bp Feature: domain Description: GIIM Note: maturase Location: 10402 -10636 bp Feature: gene Location: 10931-11062 bp Feature: gene Location: 11513-11839 bp Feature: domain Description: SRAP Location: 11519-11831 bp Feature: domain Description: SRAP Location: 11519-11831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), trehalos_R_Bsub (TIGR02404), RVT-GII, GIIM (pfam08388)

Seq: NUZU01000029.1 Bacillus sp. AFS073361 AFS073361_116_A10_Contig39_140618, whole genome shotgun sequence (65524 bp)
Overview 1 RT 1: 1-4556 bp Neighborhood of RT #1 [1, 4556] HNHc RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-447 bp Feature: domain Description: HNHc Note: nucleases Location: 184-325 bp Feature: domain Description: HNHc Note: nucleases Location: 184-3 25 bp Feature: gene Location: 1145-2371 bp Feature: RT Description: RVT_N Location: 1193-1436 bp Feature: RT Description: RVT_N Location: 1193 -143 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493-2147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493 -2147 bp Feature: domain Description: GIIM Note: maturase Location: 2222-2369 bp Feature: domain Description: GIIM Note: maturase Location: 2222-23 69 bp Feature: gene Location: 2519-2911 bp Feature: domain Description: HNHc Note: nucleases Location: 2645-2816 bp Feature: domain Description: HNHc Note: nucleases Location: 2645-2816 bp Feature: gene Location: 3114-4556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NUZU01000218.1 Bacillus sp. AFS073361 AFS073361_116_A10_Contig40_140618, whole genome shotgun sequence (52901 bp)
Overview 1 RT 1: 47053-52485 bp Neighborhood of RT #1 [47053, 52898] rimI RVT-GII xerC XerD XerD RVT-GII Feature: gene Location: 47053-47304 bp Feature: gene Location: 47365-47550 bp Feature: domain Description: rimI Location: 47368-47509 bp Feature: domain Description: rimI Location: 4 7368-4 7509 bp Feature: gene Location: 48464-48985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48722-48959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 8722-4 8959 bp Feature: gene Location: 49048-50010 bp Feature: domain Description: xerC Location: 49060-49930 bp Feature: domain Description: xerC Location: 4 9060-4 9930 bp Feature: gene Location: 50000-51925 bp Feature: domain Description: XerD Location: 50006-50891 bp Feature: domain Description: XerD Location: 50006-50891 bp Feature: domain Description: XerD Location: 51026-51869 bp Feature: domain Description: XerD Location: 51026-51869 bp Feature: gene Location: 51969-52898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52011-52485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52011-524 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rimI (TIGR01575), RVT-GII, xerC (PRK01287), XerD (COG4974)

Seq: NUZU01000046.1 Bacillus sp. AFS073361 AFS073361_116_A10_Contig61_140618, whole genome shotgun sequence (60523 bp)
Overview 1 RT 1: 53-1440 bp 2 RT 2: 22286-27342 bp Neighborhood of RT #1 [53, 1481] RVT-GII DUF1657 Neighborhood of RT #2 [22286, 27380] YdfJ acidic_w_LPXTA RVT-GII GIIM DUF3231 DUF3231 SASP Feature: gene Location: 53-403 bp Feature: gene Location: 491-694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632-692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632-692 bp Feature: gene Location: 779-952 bp Feature: gene Location: 1275-1481 bp Feature: domain Description: DUF1657 Location: 1296-1440 bp Feature: domain Description: DUF165 7 Location: 1296-1440 bp Feature: gene Location: 22286-22603 bp Feature: domain Description: YdfJ Location: 22310-22598 bp Feature: domain Description: YdfJ Location: 22310-225 98 bp Feature: gene Location: 22786-23667 bp Feature: domain Description: acidic_w_LPXTA Location: 22810-23638 bp Feature: domain Description: acidic_w_LPXTA Location: 22810-23638 bp Feature: gene Location: 23838-25166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24093-24786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24093-24786 bp Feature: domain Description: GIIM Note: maturase Location: 24867-25080 bp Feature: domain Description: GIIM Note: maturase Location: 24867-25 080 bp Feature: gene Location: 25847-26836 bp Feature: domain Description: DUF3231 Location: 25856-26315 bp Feature: domain Description: DUF3231 Location: 25 85 6-26315 bp Feature: domain Description: DUF3231 Location: 26342-26822 bp Feature: domain Description: DUF3231 Location: 26342-26822 bp Feature: gene Location: 27156-27380 bp Feature: domain Description: SASP Location: 27180-27342 bp Feature: domain Description: SASP Location: 27180-27342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1657 (pfam07870), RVT-GII, YdfJ (COG2409), acidic_w_LPXTA (TIGR04383), GIIM (pfam08388), DUF3231 (pfam11553), SASP (pfam00269)