myRT

myRT report for GCA_002568175.1_ASM256817v1

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Seq: NVBJ01000149.1 Bacillus thuringiensis strain AFS067634 AFS067634_119_C11_Contig149_140618, whole genome shotgun sequence (3472 bp)
Overview 1 RT 1: 2-3471 bp Neighborhood of RT #1 [2, 3471] DDE_Tnp_1 RVT-GII GIIM Feature: gene Location: 2-1135 bp Feature: domain Description: DDE_Tnp_1 Location: 434-1121 bp Feature: domain Description: DDE_Tnp_1 Location: 434-1 1 21 bp Feature: gene Location: 1287-1466 bp Feature: gene Location: 1640-2944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1925-2564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 925-2564 bp Feature: domain Description: GIIM Note: maturase Location: 2639-2864 bp Feature: domain Description: GIIM Note: maturase Location: 2639-2864 bp Feature: gene Location: 3214-3471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)

Seq: NVBJ01000004.1 Bacillus thuringiensis strain AFS067634 AFS067634_119_C11_Contig4_140618, whole genome shotgun sequence (141175 bp)
Overview 1 RT 1: 23399-29487 bp Neighborhood of RT #1 [23399, 29492] PRK13922 PRK13927 RVT-GII HNHc PRK00024 PRK00148 Feature: gene Location: 23399-24250 bp Feature: domain Description: PRK13922 Location: 23402-24230 bp Feature: domain Description: PRK1392 2 Location: 2 3402 -2 42 30 bp Feature: gene Location: 24292-25311 bp Feature: domain Description: PRK13927 Location: 24310-25300 bp Feature: domain Description: PRK1392 7 Location: 2 4310-2 5300 bp Feature: gene Location: 25633-27507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25954-26665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5954-2 6665 bp Feature: domain Description: HNHc Note: nucleases Location: 27259-27427 bp Feature: domain Description: HNHc Note: nucleases Location: 2 72 59-2 742 7 bp Feature: gene Location: 28208-28849 bp Feature: domain Description: PRK00024 Location: 28220-28835 bp Feature: domain Description: PRK0002 4 Location: 2 82 2 0-2 8835 bp Feature: gene Location: 28896-29492 bp Feature: domain Description: PRK00148 Location: 28926-29487 bp Feature: domain Description: PRK00148 Location: 2 892 6-2 9487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT-GII, HNHc (smart00507), PRK00024 (DNA repair protein RadC), PRK00148 (Maf-like protein; Reviewed)

Seq: NVBJ01000097.1 Bacillus thuringiensis strain AFS067634 AFS067634_119_C11_Contig97_140618, whole genome shotgun sequence (24299 bp)
Overview 1 RT 1: 12001-19506 bp Neighborhood of RT #1 [12001, 19685] RVT-GII Intron_maturas2 HNHc TraG-D_C Ftsk_gamma Ftsk_gamma rpsA Feature: gene Location: 12001-12474 bp Feature: gene Location: 12492-14003 bp Feature: gene Location: 14703-16412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14865-15687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14865-15687 bp Feature: domain Description: Intron_maturas2 Location: 15768-16062 bp Feature: domain Description: Intron_maturas2 Location: 15768-16062 bp Feature: domain Description: HNHc Note: nucleases Location: 16209-16383 bp Feature: domain Description: HNHc Note: nucleases Location: 16209-163 83 bp Feature: gene Location: 16606-18468 bp Feature: domain Description: TraG-D_C Location: 16657-17017 bp Feature: domain Description: TraG-D_C Location: 16657-17017 bp Feature: domain Description: Ftsk_gamma Location: 17452-17623 bp Feature: domain Description: Ftsk_gamma Location: 17452-17623 bp Feature: domain Description: Ftsk_gamma Location: 17791-17929 bp Feature: domain Description: Ftsk_gamma Location: 17791-17929 bp Feature: gene Location: 18702-19685 bp Feature: domain Description: rpsA Location: 18969-19506 bp Feature: domain Description: rpsA Location: 18969-19506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), rpsA (TIGR00717)