myRT

myRT report for GCA_002568705.1_ASM256870v1

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Seq: NVFL01000105.1 Bacillus pseudomycoides strain AFS084126 AFS084126_104_A7_Contig105_140523, whole genome shotgun sequence (27696 bp)
Overview 1 RT 1: 6126-11868 bp 2 RT 2: 15434-19309 bp Neighborhood of RT #1 [6126, 11868] Peptidase_M78 RVT-GII Intron_maturas2 HNHc DUF1738 Neighborhood of RT #2 [15434, 19309] Spr RVT-GII Intron_maturas2 HNHc TraC-F-type Feature: gene Location: 6126-7118 bp Feature: gene Location: 7211-8611 bp Feature: domain Description: Peptidase_M78 Location: 7295-7520 bp Feature: domain Description: Peptidase_M78 Location: 7295-7520 bp Feature: gene Location: 8736-10553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9000-9831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9000-9831 bp Feature: domain Description: Intron_maturas2 Location: 9906-10200 bp Feature: domain Description: Intron_maturas2 Location: 9906-1 0200 bp Feature: domain Description: HNHc Note: nucleases Location: 10371-10524 bp Feature: domain Description: HNHc Note: nucleases Location: 1 0371 -1 0524 bp Feature: gene Location: 11145-11594 bp Feature: domain Description: DUF1738 Location: 11358-11511 bp Feature: domain Description: DUF1 738 Location: 1 1 358-1 1 51 1 bp Feature: gene Location: 11587-11868 bp Feature: gene Location: 15434-16033 bp Feature: gene Location: 16083-16550 bp Feature: domain Description: Spr Location: 16143-16533 bp Feature: domain Description: Spr Location: 1 61 43-1 6533 bp Feature: gene Location: 16667-17479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16673-16754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6673-1 6754 bp Feature: domain Description: Intron_maturas2 Location: 16826-17123 bp Feature: domain Description: Intron_maturas2 Location: 1 6826-1 71 23 bp Feature: domain Description: HNHc Note: nucleases Location: 17300-17453 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7300-1 7453 bp Feature: gene Location: 17552-18541 bp Feature: domain Description: TraC-F-type Location: 17558-18491 bp Feature: domain Description: TraC-F-type Location: 1 7558-1 8491 bp Feature: gene Location: 18548-19309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), Peptidase_M78 (pfam06114), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spr (COG0791), TraC-F-type (TIGR02746)

Seq: NVFL01000130.1 Bacillus pseudomycoides strain AFS084126 AFS084126_104_A7_Contig130_140523, whole genome shotgun sequence (2303 bp)
Overview 1 RT 1: 105-2300 bp Neighborhood of RT #1 [105, 2300] RVT_N RVT-GII GIIM Feature: gene Location: 105-1754 bp Feature: RT Description: RVT_N Location: 153-399 bp Feature: RT Description: RVT_N Location: 153-399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453-1113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453-1113 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1413 bp Feature: domain Description: GIIM Note: maturase Location: 1179-1413 bp Feature: gene Location: 2130-2300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NVFL01000054.1 Bacillus pseudomycoides strain AFS084126 AFS084126_104_A7_Contig54_140523, whole genome shotgun sequence (30166 bp)
Overview 1 RT 1: 2-5503 bp Neighborhood of RT #1 [2, 5712] DDE_Tnp_1 RVT-GII GIIM DUF4352 DUF5105 DUF3994 Feature: gene Location: 2-1471 bp Feature: domain Description: DDE_Tnp_1 Location: 398-1196 bp Feature: domain Description: DDE_Tnp_1 Location: 3 98-1196 bp Feature: gene Location: 1501-1788 bp Feature: gene Location: 2082-2999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2286-2445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2286-2445 bp Feature: domain Description: GIIM Note: maturase Location: 2697-2913 bp Feature: domain Description: GIIM Note: maturase Location: 2697-2913 bp Feature: gene Location: 3463-4518 bp Feature: domain Description: DUF4352 Location: 3577-3898 bp Feature: domain Description: DUF43 52 Location: 3 577-3 898 bp Feature: domain Description: DUF5105 Location: 3964-4513 bp Feature: domain Description: DUF5105 Location: 3 964-4513 bp Feature: gene Location: 4750-5712 bp Feature: domain Description: DUF3994 Location: 5194-5503 bp Feature: domain Description: DUF3 994 Location: 5194-5503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), DUF4352 (pfam11611), DUF5105 (pfam17118), DUF3994 (pfam13159)

Seq: NVFL01000086.1 Bacillus pseudomycoides strain AFS084126 AFS084126_104_A7_Contig86_140523, whole genome shotgun sequence (13451 bp)
Overview 1 RT 1: 2261-8851 bp Neighborhood of RT #1 [2261, 8874] AcrR PRK06752 RVT-GII GIIM HNHc BaxI_1 Uup ABC_tran_CTD Feature: gene Location: 2261-2635 bp Feature: domain Description: AcrR Location: 2285-2558 bp Feature: domain Description: AcrR Location: 2285-2558 bp Feature: gene Location: 2835-2993 bp Feature: domain Description: PRK06752 Location: 2841-2988 bp Feature: domain Description: PRK06752 Location: 284 1-2988 bp Feature: gene Location: 3358-5220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3652-4357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3652-4 357 bp Feature: domain Description: GIIM Note: maturase Location: 4456-4663 bp Feature: domain Description: GIIM Note: maturase Location: 4 4 56-4 663 bp Feature: domain Description: HNHc Note: nucleases Location: 4966-5140 bp Feature: domain Description: HNHc Note: nucleases Location: 4 966-514 0 bp Feature: gene Location: 6175-6906 bp Feature: domain Description: BaxI_1 Location: 6190-6895 bp Feature: domain Description: BaxI_1 Location: 6190-6895 bp Feature: gene Location: 6982-8874 bp Feature: domain Description: Uup Location: 6985-8575 bp Feature: domain Description: Uup Location: 6985-8575 bp Feature: domain Description: ABC_tran_CTD Location: 8656-8851 bp Feature: domain Description: ABC_tran_CTD Location: 8656-8851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), PRK06752 (single-stranded DNA-binding protein; Validated), RVT-GII, GIIM (pfam08388), HNHc (smart00507), BaxI_1 (pfam12811), Uup (COG0488), ABC_tran_CTD (pfam16326)