myRT

myRT report for GCA_002568765.1_ASM256876v1

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Seq: NVFT01000044.1 Bacillus pseudomycoides strain AFS081374 AFS081374_120_E1_Contig44_140618, whole genome shotgun sequence (54981 bp)
Overview 1 RT 1: 20231-25472 bp Neighborhood of RT #1 [20231, 25504] Rve PDDEXK_2 RVT_N RVT-GII GIIM HNHc PDDEXK_2 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 20231-20485 bp Feature: domain Description: Rve Location: 20240-20483 bp Feature: domain Description: Rve Location: 20240-20483 bp Feature: gene Location: 20858-21127 bp Feature: domain Description: PDDEXK_2 Location: 20885-21116 bp Feature: domain Description: PDDEXK_2 Location: 20885-21 1 1 6 bp Feature: gene Location: 21702-23498 bp Feature: RT Description: RVT_N Location: 21750-21993 bp Feature: RT Description: RVT_N Location: 21 750-21 993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22050-22719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22050-2271 9 bp Feature: domain Description: GIIM Note: maturase Location: 22779-23013 bp Feature: domain Description: GIIM Note: maturase Location: 22779-2301 3 bp Feature: domain Description: HNHc Note: nucleases Location: 23214-23379 bp Feature: domain Description: HNHc Note: nucleases Location: 2321 4-23379 bp Feature: gene Location: 23488-23850 bp Feature: domain Description: PDDEXK_2 Location: 23608-23833 bp Feature: domain Description: PDDEXK_2 Location: 23608-23833 bp Feature: gene Location: 23933-25504 bp Feature: domain Description: zf-IS66 Location: 24305-24437 bp Feature: domain Description: zf-IS66 Location: 24305-24437 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24503-25328 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24503-25328 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25349-25472 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 25349-25472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), PDDEXK_2 (pfam12784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: NVFT01000165.1 Bacillus pseudomycoides strain AFS081374 AFS081374_120_E1_Contig64_140618, whole genome shotgun sequence (30646 bp)
Overview 1 RT 1: 438-6404 bp Neighborhood of RT #1 [438, 6613] MFS_MefA_like RVT-GII GIIM DUF4352 DUF5105 DUF3994 Feature: gene Location: 438-1811 bp Feature: domain Description: MFS_MefA_like Location: 600-1740 bp Feature: domain Description: MFS_MefA_like Location: 600-1740 bp Feature: gene Location: 2984-3901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3188-3347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3188-3347 bp Feature: domain Description: GIIM Note: maturase Location: 3599-3815 bp Feature: domain Description: GIIM Note: maturase Location: 3599-3815 bp Feature: gene Location: 4363-5418 bp Feature: domain Description: DUF4352 Location: 4477-4798 bp Feature: domain Description: DUF4352 Location: 4477-4798 bp Feature: domain Description: DUF5105 Location: 4864-5413 bp Feature: domain Description: DUF5105 Location: 4864-5413 bp Feature: gene Location: 5651-6613 bp Feature: domain Description: DUF3994 Location: 6095-6404 bp Feature: domain Description: DUF3994 Location: 6095-6404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4352 (pfam11611), DUF5105 (pfam17118), MFS_MefA_like (cd06173)

Seq: NVFT01000166.1 Bacillus pseudomycoides strain AFS081374 AFS081374_120_E1_Contig65_140618, whole genome shotgun sequence (13891 bp)
Overview 1 RT 1: 5585-12477 bp Neighborhood of RT #1 [5585, 12477] RVT_N RVT-GII GIIM COG5263 FN3 DUF3238 Feature: gene Location: 5585-6559 bp Feature: gene Location: 6576-7031 bp Feature: gene Location: 7252-8901 bp Feature: RT Description: RVT_N Location: 7300-7546 bp Feature: RT Description: RVT_N Location: 73 00-7546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7600-8260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7600-8260 bp Feature: domain Description: GIIM Note: maturase Location: 8326-8560 bp Feature: domain Description: GIIM Note: maturase Location: 83 26-8560 bp Feature: gene Location: 9663-11603 bp Feature: domain Description: COG5263 Location: 9795-10095 bp Feature: domain Description: COG5263 Location: 9795-10095 bp Feature: domain Description: FN3 Location: 10209-10425 bp Feature: domain Description: FN3 Location: 10209-10425 bp Feature: domain Description: DUF3238 Location: 11019-11469 bp Feature: domain Description: DUF3 23 8 Location: 11019-11469 bp Feature: gene Location: 11749-12477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5263 (Glucan-binding domain (YG repeat) ), FN3 (smart00060), DUF3238 (pfam11579)

Seq: NVFT01000178.1 Bacillus pseudomycoides strain AFS081374 AFS081374_120_E1_Contig77_140618, whole genome shotgun sequence (46209 bp)
Overview 1 RT 1: 16468-22116 bp 2 RT 2: 32390-36737 bp Neighborhood of RT #1 [16468, 22116] RVT-GII Intron_maturas2 HNHc DUF1738 Neighborhood of RT #2 [32390, 36808] T4SS-DNA_transf PolY_Pol_V_umuC RVT-GII Intron_maturas2 HNHc PRK03103 Rve Feature: gene Location: 16468-17472 bp Feature: gene Location: 17534-18805 bp Feature: gene Location: 18831-20684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19095-19935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19095-19935 bp Feature: domain Description: Intron_maturas2 Location: 20025-20373 bp Feature: domain Description: Intron_maturas2 Location: 20025-20373 bp Feature: domain Description: HNHc Note: nucleases Location: 20466-20631 bp Feature: domain Description: HNHc Note: nucleases Location: 204 66-20631 bp Feature: gene Location: 21396-21773 bp Feature: domain Description: DUF1738 Location: 21540-21693 bp Feature: domain Description: DUF1738 Location: 2154 0-21693 bp Feature: gene Location: 21835-22116 bp Feature: gene Location: 32390-32701 bp Feature: domain Description: T4SS-DNA_transf Location: 32417-32594 bp Feature: domain Description: T4 SS-DNA_transf Location: 324 17-32594 bp Feature: gene Location: 32713-32967 bp Feature: domain Description: PolY_Pol_V_umuC Location: 32716-32962 bp Feature: domain Description: PolY_Pol_V_umuC Location: 32716-32962 bp Feature: gene Location: 33634-35445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33898-34729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33898-34 729 bp Feature: domain Description: Intron_maturas2 Location: 34810-35143 bp Feature: domain Description: Intron_maturas2 Location: 34 810-3514 3 bp Feature: domain Description: HNHc Note: nucleases Location: 35239-35416 bp Feature: domain Description: HNHc Note: nucleases Location: 35239-354 16 bp Feature: gene Location: 35708-35968 bp Feature: domain Description: PRK03103 Location: 35723-35957 bp Feature: domain Description: PRK03103 Location: 35723-35957 bp Feature: gene Location: 36101-36808 bp Feature: domain Description: Rve Location: 36125-36737 bp Feature: domain Description: Rve Location: 36125-36737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1738 (pfam08401), T4SS-DNA_transf (pfam02534), PolY_Pol_V_umuC (cd01700), PRK03103 (DNA polymerase IV; Reviewed), Rve (COG3316)